Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
AMBRA1Q9C0C7 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
AMBRA1Q9C0C7 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 AC015922.1-201ENST00000421102 1152 ntBASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 AC005034.1-201ENST00000426657 489 ntBASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 HLA-V-204ENST00000476601 1289 ntBASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 DUX4L27-201ENST00000554796 1261 ntBASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 MIR4745-201ENST00000577608 62 ntBASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 AL390955.2-201ENST00000603032 514 ntBASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 LINC01115-203ENST00000606068 577 ntBASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 CETN4P-206ENST00000642099 2168 ntBASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
AMBRA1Q9C0C7 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
AMBRA1Q9C0C7 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
AMBRA1Q9C0C7 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
AMBRA1Q9C0C7 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
AMBRA1Q9C0C7 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
AMBRA1Q9C0C7 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
AMBRA1Q9C0C7 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC14.21□□□□□ -0.14
AMBRA1Q9C0C7 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
AMBRA1Q9C0C7 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
AMBRA1Q9C0C7 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 AC063926.2-201ENST00000623766 1308 ntBASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 AC138969.3-201ENST00000546612 1459 ntBASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 AC138932.2-201ENST00000548268 1459 ntBASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 AC126755.4-201ENST00000549796 1459 ntBASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 AL359183.1-201ENST00000623796 2132 ntBASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 AC055876.3-201ENST00000431496 288 ntBASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 RNA5SP421-201ENST00000516864 134 ntBASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 PUDP-206ENST00000540122 825 ntTSL 2 BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 AC138761.1-201ENST00000584393 385 ntBASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 AC005498.2-205ENST00000593218 784 ntBASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 AC138649.4-201ENST00000612222 287 ntBASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 AC007787.1-201ENST00000588095 1583 ntBASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
AMBRA1Q9C0C7 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms