Protein–RNA interactions for Protein: Q96LT7

C9orf72, Guanine nucleotide exchange C9orf72, humanhuman

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf72Q96LT7 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 SERBP1P5-201ENST00000510079 1181 ntBASIC15.65■□□□□ 0.1
C9orf72Q96LT7 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 AL079307.3-201ENST00000556114 283 ntBASIC15.65■□□□□ 0.1
C9orf72Q96LT7 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 AC009118.2-201ENST00000613275 655 ntBASIC15.65■□□□□ 0.1
C9orf72Q96LT7 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 AC136759.1-202ENST00000530858 2194 ntBASIC15.65■□□□□ 0.1
C9orf72Q96LT7 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.65■□□□□ 0.1
C9orf72Q96LT7 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC15.65■□□□□ 0.1
C9orf72Q96LT7 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC15.64■□□□□ 0.1
C9orf72Q96LT7 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.1
C9orf72Q96LT7 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 TKT-201ENST00000296289 1931 ntTSL 5 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 C1R-201ENST00000535233 2211 ntTSL 2 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 AF228730.6-201ENST00000641497 218 ntBASIC15.64■□□□□ 0.09
C9orf72Q96LT7 AC084121.3-201ENST00000641716 218 ntBASIC15.64■□□□□ 0.09
C9orf72Q96LT7 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
C9orf72Q96LT7 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
C9orf72Q96LT7 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
C9orf72Q96LT7 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.63■□□□□ 0.09
C9orf72Q96LT7 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.63■□□□□ 0.09
C9orf72Q96LT7 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
C9orf72Q96LT7 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
C9orf72Q96LT7 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
C9orf72Q96LT7 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.63■□□□□ 0.09
C9orf72Q96LT7 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms