Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TTC28Q96AY4 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC14.89□□□□□ -0.03
TTC28Q96AY4 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC14.89□□□□□ -0.03
TTC28Q96AY4 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC14.89□□□□□ -0.03
TTC28Q96AY4 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC14.89□□□□□ -0.03
TTC28Q96AY4 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC14.89□□□□□ -0.03
TTC28Q96AY4 AL590556.2-202ENST00000636906 844 ntBASIC14.89□□□□□ -0.03
TTC28Q96AY4 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
TTC28Q96AY4 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TTC28Q96AY4 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TTC28Q96AY4 AL136172.1-201ENST00000598590 1394 ntBASIC14.89□□□□□ -0.03
TTC28Q96AY4 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TTC28Q96AY4 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.89□□□□□ -0.03
TTC28Q96AY4 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TTC28Q96AY4 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
TTC28Q96AY4 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
TTC28Q96AY4 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC14.89□□□□□ -0.03
TTC28Q96AY4 TREX1-203ENST00000456089 629 ntTSL 3 BASIC14.89□□□□□ -0.03
TTC28Q96AY4 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC14.89□□□□□ -0.03
TTC28Q96AY4 RN7SL767P-201ENST00000493013 295 ntBASIC14.89□□□□□ -0.03
TTC28Q96AY4 CRYBB2P1-204ENST00000509460 701 ntTSL 3 BASIC14.89□□□□□ -0.03
TTC28Q96AY4 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC14.89□□□□□ -0.03
TTC28Q96AY4 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC14.89□□□□□ -0.03
TTC28Q96AY4 AC016582.2-202ENST00000587765 1094 ntBASIC14.89□□□□□ -0.03
TTC28Q96AY4 AC007292.1-201ENST00000594444 746 ntTSL 2 BASIC14.89□□□□□ -0.03
TTC28Q96AY4 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC14.89□□□□□ -0.03
TTC28Q96AY4 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC14.89□□□□□ -0.03
TTC28Q96AY4 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TTC28Q96AY4 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TTC28Q96AY4 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
TTC28Q96AY4 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC14.89□□□□□ -0.03
TTC28Q96AY4 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TTC28Q96AY4 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
TTC28Q96AY4 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TTC28Q96AY4 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC14.88□□□□□ -0.03
TTC28Q96AY4 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
TTC28Q96AY4 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
TTC28Q96AY4 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.88□□□□□ -0.03
TTC28Q96AY4 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 ZNF877P-201ENST00000437614 612 ntBASIC14.88□□□□□ -0.03
TTC28Q96AY4 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC14.88□□□□□ -0.03
TTC28Q96AY4 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.88□□□□□ -0.03
TTC28Q96AY4 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.88□□□□□ -0.03
TTC28Q96AY4 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
TTC28Q96AY4 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 AL359092.2-201ENST00000423330 585 ntBASIC14.88□□□□□ -0.03
TTC28Q96AY4 AC079325.1-201ENST00000430386 857 ntBASIC14.88□□□□□ -0.03
TTC28Q96AY4 DMKN-211ENST00000436012 848 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
TTC28Q96AY4 SCGB1A1-202ENST00000534397 466 ntTSL 3 BASIC14.88□□□□□ -0.03
TTC28Q96AY4 AC112694.1-202ENST00000540985 943 ntBASIC14.88□□□□□ -0.03
TTC28Q96AY4 CLPP-205ENST00000596605 646 ntTSL 2 BASIC14.88□□□□□ -0.03
TTC28Q96AY4 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC14.88□□□□□ -0.03
TTC28Q96AY4 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
TTC28Q96AY4 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.88□□□□□ -0.03
TTC28Q96AY4 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC14.88□□□□□ -0.03
TTC28Q96AY4 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.88□□□□□ -0.03
TTC28Q96AY4 CLP1-202ENST00000525602 1392 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TTC28Q96AY4 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC14.87□□□□□ -0.03
TTC28Q96AY4 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC14.87□□□□□ -0.03
TTC28Q96AY4 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC14.87□□□□□ -0.03
TTC28Q96AY4 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TTC28Q96AY4 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
TTC28Q96AY4 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
TTC28Q96AY4 CRCT1-201ENST00000368790 700 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TTC28Q96AY4 OR8T1P-201ENST00000421347 918 ntBASIC14.87□□□□□ -0.03
TTC28Q96AY4 RPL18AP15-201ENST00000430258 517 ntBASIC14.87□□□□□ -0.03
TTC28Q96AY4 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC14.87□□□□□ -0.03
TTC28Q96AY4 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
TTC28Q96AY4 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.87□□□□□ -0.03
TTC28Q96AY4 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC14.87□□□□□ -0.03
TTC28Q96AY4 ANKRD26P1-203ENST00000569528 966 ntBASIC14.87□□□□□ -0.03
TTC28Q96AY4 KRT8P34-201ENST00000577607 1044 ntBASIC14.87□□□□□ -0.03
TTC28Q96AY4 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC14.87□□□□□ -0.03
TTC28Q96AY4 SIGLEC22P-201ENST00000599104 714 ntBASIC14.87□□□□□ -0.03
TTC28Q96AY4 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC14.87□□□□□ -0.03
TTC28Q96AY4 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
TTC28Q96AY4 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TTC28Q96AY4 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
TTC28Q96AY4 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TTC28Q96AY4 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TTC28Q96AY4 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms