Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 TREML5P-201ENST00000421694 576 ntBASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 GHSR-202ENST00000427970 912 ntBASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 AC087499.5-201ENST00000452760 1342 ntBASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 AC025181.2-201ENST00000606994 802 ntBASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 AL844908.2-201ENST00000609461 460 ntBASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 AC067750.1-201ENST00000608826 6545 ntBASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP4Q8N3C7 APP-205ENST00000358918 2366 ntTSL 5 BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 ACE3P-201ENST00000423435 1973 ntBASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP4Q8N3C7 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 LY6E-204ENST00000519546 971 ntTSL 2 BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms