Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE3Q6ZMZ3 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.85■□□□□ 0.45
SYNE3Q6ZMZ3 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE3Q6ZMZ3 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC17.85■□□□□ 0.45
SYNE3Q6ZMZ3 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE3Q6ZMZ3 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
SYNE3Q6ZMZ3 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC17.85■□□□□ 0.45
SYNE3Q6ZMZ3 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC17.85■□□□□ 0.45
SYNE3Q6ZMZ3 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC17.85■□□□□ 0.45
SYNE3Q6ZMZ3 KSR1-207ENST00000578981 748 ntTSL 4 BASIC17.85■□□□□ 0.45
SYNE3Q6ZMZ3 CLUHP6-201ENST00000580789 941 ntBASIC17.85■□□□□ 0.45
SYNE3Q6ZMZ3 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE3Q6ZMZ3 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE3Q6ZMZ3 AC106881.1-201ENST00000605849 3329 ntBASIC17.85■□□□□ 0.45
SYNE3Q6ZMZ3 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
SYNE3Q6ZMZ3 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE3Q6ZMZ3 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 AC013726.1-201ENST00000563747 2285 ntBASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 CICP23-201ENST00000605013 2741 ntBASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 KLF2P2-201ENST00000416807 1039 ntBASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 AC093433.1-201ENST00000458048 571 ntBASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 AL596325.1-201ENST00000563991 1082 ntBASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 ATF5-205ENST00000600336 682 ntTSL 2 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 USE1-206ENST00000595101 1776 ntTSL 2 BASIC17.84■□□□□ 0.45
SYNE3Q6ZMZ3 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
SYNE3Q6ZMZ3 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SYNE3Q6ZMZ3 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SYNE3Q6ZMZ3 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SYNE3Q6ZMZ3 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SYNE3Q6ZMZ3 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
SYNE3Q6ZMZ3 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SYNE3Q6ZMZ3 LRRC59-203ENST00000576448 1531 ntBASIC17.83■□□□□ 0.45
SYNE3Q6ZMZ3 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
SYNE3Q6ZMZ3 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SYNE3Q6ZMZ3 KRT8P14-201ENST00000414254 1442 ntBASIC17.83■□□□□ 0.45
SYNE3Q6ZMZ3 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SYNE3Q6ZMZ3 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SYNE3Q6ZMZ3 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
SYNE3Q6ZMZ3 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SYNE3Q6ZMZ3 GSN-203ENST00000373808 2664 ntTSL 2 BASIC17.83■□□□□ 0.44
SYNE3Q6ZMZ3 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SYNE3Q6ZMZ3 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SYNE3Q6ZMZ3 RNU1-114P-201ENST00000365297 166 ntBASIC17.83■□□□□ 0.44
SYNE3Q6ZMZ3 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC17.83■□□□□ 0.44
SYNE3Q6ZMZ3 PGGT1BP2-201ENST00000398621 1028 ntBASIC17.83■□□□□ 0.44
SYNE3Q6ZMZ3 HLA-K-203ENST00000430151 1046 ntBASIC17.83■□□□□ 0.44
SYNE3Q6ZMZ3 ACTG1P3-201ENST00000431775 1114 ntBASIC17.83■□□□□ 0.44
SYNE3Q6ZMZ3 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC17.83■□□□□ 0.44
SYNE3Q6ZMZ3 AC022616.1-201ENST00000518688 554 ntBASIC17.83■□□□□ 0.44
SYNE3Q6ZMZ3 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC17.83■□□□□ 0.44
SYNE3Q6ZMZ3 AP005018.1-201ENST00000525475 301 ntBASIC17.83■□□□□ 0.44
SYNE3Q6ZMZ3 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SYNE3Q6ZMZ3 PTP4A1P2-201ENST00000546033 454 ntBASIC17.83■□□□□ 0.44
SYNE3Q6ZMZ3 POLE2-203ENST00000553805 496 ntTSL 2 BASIC17.83■□□□□ 0.44
SYNE3Q6ZMZ3 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC17.83■□□□□ 0.44
SYNE3Q6ZMZ3 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC17.83■□□□□ 0.44
SYNE3Q6ZMZ3 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC17.83■□□□□ 0.44
SYNE3Q6ZMZ3 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms