Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
SHROOM1Q2M3G4 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM1Q2M3G4 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM1Q2M3G4 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
SHROOM1Q2M3G4 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM1Q2M3G4 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
SHROOM1Q2M3G4 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM1Q2M3G4 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
SHROOM1Q2M3G4 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.47■□□□□ 0.39
SHROOM1Q2M3G4 CICP23-201ENST00000605013 2741 ntBASIC17.47■□□□□ 0.39
SHROOM1Q2M3G4 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM1Q2M3G4 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM1Q2M3G4 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.47■□□□□ 0.39
SHROOM1Q2M3G4 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.47■□□□□ 0.39
SHROOM1Q2M3G4 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC17.47■□□□□ 0.39
SHROOM1Q2M3G4 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC17.47■□□□□ 0.39
SHROOM1Q2M3G4 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM1Q2M3G4 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM1Q2M3G4 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 PCDHGB8P-201ENST00000502926 1973 ntBASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 SALL4P5-201ENST00000419001 1760 ntBASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 AC092506.1-202ENST00000401022 528 ntBASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 AC125604.1-201ENST00000496255 707 ntBASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 AC079336.7-201ENST00000623428 1078 ntBASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 AL805961.1-203ENST00000641078 1258 ntBASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 AC007292.2-201ENST00000593524 1812 ntBASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC17.46■□□□□ 0.39
SHROOM1Q2M3G4 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC17.46■□□□□ 0.38
SHROOM1Q2M3G4 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SHROOM1Q2M3G4 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
SHROOM1Q2M3G4 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.38
SHROOM1Q2M3G4 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 API5-203ENST00000455725 2257 ntTSL 2 BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 FAM90A7P-201ENST00000382628 1395 ntBASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 FAM90A23P-201ENST00000400136 1395 ntBASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 AC011742.3-201ENST00000439053 820 ntBASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 Z97180.1-201ENST00000445173 988 ntBASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 CICP12-201ENST00000455801 843 ntBASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 PARP8-218ENST00000513738 596 ntTSL 4 BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC17.45■□□□□ 0.38
SHROOM1Q2M3G4 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms