Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.31□□□□□ -0.12
RAE1P78406 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
RAE1P78406 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.31□□□□□ -0.12
RAE1P78406 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.31□□□□□ -0.12
RAE1P78406 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
RAE1P78406 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.31□□□□□ -0.12
RAE1P78406 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.31□□□□□ -0.12
RAE1P78406 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.31□□□□□ -0.12
RAE1P78406 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.31□□□□□ -0.12
RAE1P78406 AC140912.1-201ENST00000577171 1054 ntBASIC14.31□□□□□ -0.12
RAE1P78406 MIR4745-201ENST00000577608 62 ntBASIC14.31□□□□□ -0.12
RAE1P78406 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.31□□□□□ -0.12
RAE1P78406 AC138761.1-201ENST00000584393 385 ntBASIC14.31□□□□□ -0.12
RAE1P78406 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.31□□□□□ -0.12
RAE1P78406 RPSAP52-203ENST00000622976 1023 ntBASIC14.31□□□□□ -0.12
RAE1P78406 CU634019.7-201ENST00000624153 1185 ntBASIC14.31□□□□□ -0.12
RAE1P78406 FP236241.2-201ENST00000624906 1185 ntBASIC14.31□□□□□ -0.12
RAE1P78406 MSTO2P-201ENST00000314835 1709 ntBASIC14.31□□□□□ -0.12
RAE1P78406 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
RAE1P78406 AC015656.1-201ENST00000624209 3578 ntBASIC14.31□□□□□ -0.12
RAE1P78406 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.31□□□□□ -0.12
RAE1P78406 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
RAE1P78406 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 AC027601.5-201ENST00000624065 2482 ntBASIC14.31□□□□□ -0.12
RAE1P78406 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
RAE1P78406 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
RAE1P78406 LRRC59-203ENST00000576448 1531 ntBASIC14.31□□□□□ -0.12
RAE1P78406 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.31□□□□□ -0.12
RAE1P78406 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RAE1P78406 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.3□□□□□ -0.12
RAE1P78406 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.3□□□□□ -0.12
RAE1P78406 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.3□□□□□ -0.12
RAE1P78406 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
RAE1P78406 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.3□□□□□ -0.12
RAE1P78406 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
RAE1P78406 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
RAE1P78406 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.3□□□□□ -0.12
RAE1P78406 DGCR5-201ENST00000399539 862 ntBASIC14.3□□□□□ -0.12
RAE1P78406 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.3□□□□□ -0.12
RAE1P78406 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.3□□□□□ -0.12
RAE1P78406 AL162726.2-201ENST00000438986 1017 ntBASIC14.3□□□□□ -0.12
RAE1P78406 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.3□□□□□ -0.12
RAE1P78406 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.3□□□□□ -0.12
RAE1P78406 AC022137.2-201ENST00000503482 481 ntBASIC14.3□□□□□ -0.12
RAE1P78406 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
RAE1P78406 AC022447.6-201ENST00000515522 438 ntBASIC14.3□□□□□ -0.12
RAE1P78406 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
RAE1P78406 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
RAE1P78406 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.3□□□□□ -0.12
RAE1P78406 HSPA7-201ENST00000445535 1927 ntBASIC14.3□□□□□ -0.12
RAE1P78406 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.3□□□□□ -0.12
RAE1P78406 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
RAE1P78406 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.3□□□□□ -0.12
RAE1P78406 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.3□□□□□ -0.12
RAE1P78406 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 AC003102.2-201ENST00000589195 1469 ntBASIC14.3□□□□□ -0.12
RAE1P78406 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RAE1P78406 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms