Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
CLRN1P58418 AL645937.2-201ENST00000396808 931 ntBASIC13.57□□□□□ -0.24
CLRN1P58418 MPV17-208ENST00000405076 603 ntTSL 5 BASIC13.57□□□□□ -0.24
CLRN1P58418 SOCS2P1-201ENST00000417727 557 ntBASIC13.57□□□□□ -0.24
CLRN1P58418 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC13.57□□□□□ -0.24
CLRN1P58418 NUS1P3-201ENST00000423502 862 ntBASIC13.57□□□□□ -0.24
CLRN1P58418 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC13.57□□□□□ -0.24
CLRN1P58418 WDR53-203ENST00000429115 683 ntTSL 2 BASIC13.57□□□□□ -0.24
CLRN1P58418 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC13.57□□□□□ -0.24
CLRN1P58418 AL442647.2-201ENST00000429864 857 ntBASIC13.57□□□□□ -0.24
CLRN1P58418 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
CLRN1P58418 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC13.57□□□□□ -0.24
CLRN1P58418 SPCS2P1-201ENST00000561636 679 ntBASIC13.57□□□□□ -0.24
CLRN1P58418 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC13.57□□□□□ -0.24
CLRN1P58418 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC13.57□□□□□ -0.24
CLRN1P58418 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC13.57□□□□□ -0.24
CLRN1P58418 MIR8072-201ENST00000614241 80 ntBASIC13.57□□□□□ -0.24
CLRN1P58418 AC008761.3-201ENST00000624803 892 ntBASIC13.57□□□□□ -0.24
CLRN1P58418 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC13.57□□□□□ -0.24
CLRN1P58418 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC13.57□□□□□ -0.24
CLRN1P58418 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 AC093525.8-201ENST00000624099 1342 ntBASIC13.57□□□□□ -0.24
CLRN1P58418 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC13.57□□□□□ -0.24
CLRN1P58418 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC13.57□□□□□ -0.24
CLRN1P58418 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 AC106881.1-201ENST00000605849 3329 ntBASIC13.57□□□□□ -0.24
CLRN1P58418 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CLRN1P58418 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CLRN1P58418 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CLRN1P58418 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
CLRN1P58418 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC13.56□□□□□ -0.24
CLRN1P58418 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
CLRN1P58418 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC13.56□□□□□ -0.24
CLRN1P58418 AL157414.3-201ENST00000624276 1954 ntBASIC13.56□□□□□ -0.24
CLRN1P58418 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CLRN1P58418 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC13.56□□□□□ -0.24
CLRN1P58418 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CLRN1P58418 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.56□□□□□ -0.24
CLRN1P58418 AMT-232ENST00000636199 1546 ntTSL 5 BASIC13.56□□□□□ -0.24
CLRN1P58418 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC13.56□□□□□ -0.24
CLRN1P58418 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CLRN1P58418 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC13.56□□□□□ -0.24
CLRN1P58418 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC13.56□□□□□ -0.24
CLRN1P58418 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CLRN1P58418 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CLRN1P58418 MYCLP2-201ENST00000449268 967 ntBASIC13.56□□□□□ -0.24
CLRN1P58418 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
CLRN1P58418 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC13.56□□□□□ -0.24
CLRN1P58418 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC13.56□□□□□ -0.24
CLRN1P58418 AP001582.1-201ENST00000525856 295 ntBASIC13.56□□□□□ -0.24
CLRN1P58418 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC13.56□□□□□ -0.24
CLRN1P58418 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC13.56□□□□□ -0.24
CLRN1P58418 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC13.56□□□□□ -0.24
CLRN1P58418 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC13.56□□□□□ -0.24
CLRN1P58418 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CLRN1P58418 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
CLRN1P58418 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CLRN1P58418 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CLRN1P58418 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CLRN1P58418 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CLRN1P58418 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
CLRN1P58418 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.56□□□□□ -0.24
CLRN1P58418 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.56□□□□□ -0.24
CLRN1P58418 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CLRN1P58418 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
CLRN1P58418 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
CLRN1P58418 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.56□□□□□ -0.24
CLRN1P58418 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC13.56□□□□□ -0.24
CLRN1P58418 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
CLRN1P58418 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC13.56□□□□□ -0.24
CLRN1P58418 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.56□□□□□ -0.24
CLRN1P58418 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CLRN1P58418 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.56□□□□□ -0.24
CLRN1P58418 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CLRN1P58418 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CLRN1P58418 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
CLRN1P58418 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC13.55□□□□□ -0.24
CLRN1P58418 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
CLRN1P58418 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
CLRN1P58418 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC13.55□□□□□ -0.24
CLRN1P58418 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC13.55□□□□□ -0.24
CLRN1P58418 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
CLRN1P58418 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms