Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
FOXA1P55317 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.65□□□□□ -0.06
FOXA1P55317 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
FOXA1P55317 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.65□□□□□ -0.06
FOXA1P55317 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
FOXA1P55317 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.65□□□□□ -0.06
FOXA1P55317 MRPS18AP1-201ENST00000414458 589 ntBASIC14.65□□□□□ -0.06
FOXA1P55317 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.65□□□□□ -0.06
FOXA1P55317 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.65□□□□□ -0.06
FOXA1P55317 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.65□□□□□ -0.06
FOXA1P55317 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.65□□□□□ -0.06
FOXA1P55317 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.65□□□□□ -0.06
FOXA1P55317 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.65□□□□□ -0.06
FOXA1P55317 AC036164.1-201ENST00000570544 333 ntBASIC14.65□□□□□ -0.06
FOXA1P55317 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
FOXA1P55317 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.65□□□□□ -0.06
FOXA1P55317 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
FOXA1P55317 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 AC055811.4-201ENST00000624039 1754 ntBASIC14.65□□□□□ -0.06
FOXA1P55317 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.65□□□□□ -0.06
FOXA1P55317 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
FOXA1P55317 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.65□□□□□ -0.06
FOXA1P55317 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.65□□□□□ -0.06
FOXA1P55317 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
FOXA1P55317 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA1P55317 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.64□□□□□ -0.07
FOXA1P55317 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.64□□□□□ -0.07
FOXA1P55317 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.64□□□□□ -0.07
FOXA1P55317 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.64□□□□□ -0.07
FOXA1P55317 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
FOXA1P55317 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.64□□□□□ -0.07
FOXA1P55317 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
FOXA1P55317 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.64□□□□□ -0.07
FOXA1P55317 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.64□□□□□ -0.07
FOXA1P55317 TPT1P11-201ENST00000458482 498 ntBASIC14.64□□□□□ -0.07
FOXA1P55317 RN7SL399P-201ENST00000471648 279 ntBASIC14.64□□□□□ -0.07
FOXA1P55317 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.64□□□□□ -0.07
FOXA1P55317 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.64□□□□□ -0.07
FOXA1P55317 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.64□□□□□ -0.07
FOXA1P55317 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.64□□□□□ -0.07
FOXA1P55317 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
FOXA1P55317 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.64□□□□□ -0.07
FOXA1P55317 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.64□□□□□ -0.07
FOXA1P55317 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.64□□□□□ -0.07
FOXA1P55317 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
FOXA1P55317 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
FOXA1P55317 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.64□□□□□ -0.07
FOXA1P55317 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.64□□□□□ -0.07
FOXA1P55317 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
FOXA1P55317 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
FOXA1P55317 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
FOXA1P55317 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA1P55317 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.63□□□□□ -0.07
FOXA1P55317 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms