Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
LIG3P49916 TERF1P3-201ENST00000505638 1227 ntBASIC16.03■□□□□ 0.16
LIG3P49916 SERBP1P5-201ENST00000510079 1181 ntBASIC16.03■□□□□ 0.16
LIG3P49916 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.03■□□□□ 0.16
LIG3P49916 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.03■□□□□ 0.16
LIG3P49916 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.03■□□□□ 0.16
LIG3P49916 AC138761.1-201ENST00000584393 385 ntBASIC16.03■□□□□ 0.16
LIG3P49916 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.03■□□□□ 0.16
LIG3P49916 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.03■□□□□ 0.16
LIG3P49916 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.03■□□□□ 0.16
LIG3P49916 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
LIG3P49916 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 HAL-202ENST00000538703 2637 ntTSL 2 BASIC16.03■□□□□ 0.16
LIG3P49916 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 AC089987.1-201ENST00000551654 2209 ntBASIC16.03■□□□□ 0.16
LIG3P49916 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC16.03■□□□□ 0.16
LIG3P49916 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
LIG3P49916 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
LIG3P49916 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
LIG3P49916 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
LIG3P49916 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
LIG3P49916 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
LIG3P49916 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LIG3P49916 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.02■□□□□ 0.16
LIG3P49916 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.02■□□□□ 0.16
LIG3P49916 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
LIG3P49916 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LIG3P49916 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
LIG3P49916 AC118758.2-201ENST00000614242 2813 ntBASIC16.02■□□□□ 0.16
LIG3P49916 HSPA7-201ENST00000445535 1927 ntBASIC16.02■□□□□ 0.16
LIG3P49916 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC16.02■□□□□ 0.16
LIG3P49916 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC16.02■□□□□ 0.16
LIG3P49916 BNIP3P1-202ENST00000550043 1585 ntBASIC16.02■□□□□ 0.16
LIG3P49916 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LIG3P49916 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LIG3P49916 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LIG3P49916 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LIG3P49916 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LIG3P49916 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.02■□□□□ 0.16
LIG3P49916 FO393414.2-201ENST00000405153 598 ntBASIC16.02■□□□□ 0.16
LIG3P49916 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LIG3P49916 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.02■□□□□ 0.16
LIG3P49916 HIST3H2BA-201ENST00000436555 524 ntBASIC16.02■□□□□ 0.16
LIG3P49916 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
LIG3P49916 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.02■□□□□ 0.16
LIG3P49916 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.02■□□□□ 0.16
LIG3P49916 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LIG3P49916 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.02■□□□□ 0.16
LIG3P49916 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.02■□□□□ 0.16
LIG3P49916 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.02■□□□□ 0.16
LIG3P49916 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.02■□□□□ 0.16
LIG3P49916 ZNF890P-202ENST00000530367 1156 ntBASIC16.02■□□□□ 0.16
LIG3P49916 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.02■□□□□ 0.16
LIG3P49916 AC044860.1-202ENST00000559481 777 ntBASIC16.02■□□□□ 0.16
LIG3P49916 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
LIG3P49916 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.02■□□□□ 0.16
LIG3P49916 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC16.02■□□□□ 0.16
LIG3P49916 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.02■□□□□ 0.16
LIG3P49916 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LIG3P49916 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LIG3P49916 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC16.02■□□□□ 0.15
LIG3P49916 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
LIG3P49916 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LIG3P49916 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.02■□□□□ 0.15
LIG3P49916 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
LIG3P49916 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC16.02■□□□□ 0.15
LIG3P49916 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LIG3P49916 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.15
LIG3P49916 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
LIG3P49916 KRT8P37-201ENST00000451609 1420 ntBASIC16.02■□□□□ 0.15
LIG3P49916 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.02■□□□□ 0.15
LIG3P49916 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
LIG3P49916 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
LIG3P49916 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LIG3P49916 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC16.01■□□□□ 0.15
LIG3P49916 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.01■□□□□ 0.15
LIG3P49916 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LIG3P49916 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LIG3P49916 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC16.01■□□□□ 0.15
LIG3P49916 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LIG3P49916 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LIG3P49916 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.01■□□□□ 0.15
LIG3P49916 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
LIG3P49916 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LIG3P49916 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LIG3P49916 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LIG3P49916 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LIG3P49916 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LIG3P49916 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
LIG3P49916 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.01■□□□□ 0.15
LIG3P49916 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LIG3P49916 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms