Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC17.31■□□□□ 0.36
SCN4AP35499 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SCN4AP35499 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SCN4AP35499 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC17.31■□□□□ 0.36
SCN4AP35499 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SCN4AP35499 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC17.31■□□□□ 0.36
SCN4AP35499 AC008026.2-201ENST00000495438 348 ntBASIC17.31■□□□□ 0.36
SCN4AP35499 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC17.31■□□□□ 0.36
SCN4AP35499 AC023968.2-201ENST00000560593 1049 ntBASIC17.31■□□□□ 0.36
SCN4AP35499 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC17.31■□□□□ 0.36
SCN4AP35499 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC17.31■□□□□ 0.36
SCN4AP35499 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC17.31■□□□□ 0.36
SCN4AP35499 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC17.31■□□□□ 0.36
SCN4AP35499 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
SCN4AP35499 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC17.31■□□□□ 0.36
SCN4AP35499 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC17.31■□□□□ 0.36
SCN4AP35499 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SCN4AP35499 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SCN4AP35499 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.31■□□□□ 0.36
SCN4AP35499 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SCN4AP35499 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SCN4AP35499 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC17.31■□□□□ 0.36
SCN4AP35499 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SCN4AP35499 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SCN4AP35499 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SCN4AP35499 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SCN4AP35499 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SCN4AP35499 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SCN4AP35499 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SCN4AP35499 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC17.31■□□□□ 0.36
SCN4AP35499 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SCN4AP35499 AC023141.7-201ENST00000430646 407 ntBASIC17.31■□□□□ 0.36
SCN4AP35499 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC17.31■□□□□ 0.36
SCN4AP35499 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SCN4AP35499 DUT-207ENST00000559416 635 ntTSL 2 BASIC17.31■□□□□ 0.36
SCN4AP35499 AP000769.1-203ENST00000637245 208 ntBASIC17.31■□□□□ 0.36
SCN4AP35499 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.31■□□□□ 0.36
SCN4AP35499 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC17.3■□□□□ 0.36
SCN4AP35499 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SCN4AP35499 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SCN4AP35499 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC17.3■□□□□ 0.36
SCN4AP35499 AL512599.1-201ENST00000430724 685 ntBASIC17.3■□□□□ 0.36
SCN4AP35499 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SCN4AP35499 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC17.3■□□□□ 0.36
SCN4AP35499 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SCN4AP35499 AC105250.1-201ENST00000509378 2057 ntBASIC17.3■□□□□ 0.36
SCN4AP35499 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SCN4AP35499 PCDHB19P-201ENST00000570871 2371 ntBASIC17.29■□□□□ 0.36
SCN4AP35499 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SCN4AP35499 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SCN4AP35499 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SCN4AP35499 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.29■□□□□ 0.36
SCN4AP35499 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SCN4AP35499 SNX15-201ENST00000352068 771 ntTSL 5 BASIC17.29■□□□□ 0.36
SCN4AP35499 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SCN4AP35499 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC17.29■□□□□ 0.36
SCN4AP35499 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC17.29■□□□□ 0.36
SCN4AP35499 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SCN4AP35499 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC17.29■□□□□ 0.36
SCN4AP35499 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC17.29■□□□□ 0.36
SCN4AP35499 RN7SL767P-201ENST00000493013 295 ntBASIC17.29■□□□□ 0.36
SCN4AP35499 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC17.29■□□□□ 0.36
SCN4AP35499 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC17.29■□□□□ 0.36
SCN4AP35499 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SCN4AP35499 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC17.29■□□□□ 0.36
SCN4AP35499 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC17.29■□□□□ 0.36
SCN4AP35499 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC17.29■□□□□ 0.36
SCN4AP35499 AL590235.1-201ENST00000564650 861 ntBASIC17.29■□□□□ 0.36
SCN4AP35499 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SCN4AP35499 AC012313.1-201ENST00000593393 3059 ntBASIC17.29■□□□□ 0.36
SCN4AP35499 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SCN4AP35499 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
SCN4AP35499 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.29■□□□□ 0.36
SCN4AP35499 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC17.29■□□□□ 0.36
SCN4AP35499 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC17.29■□□□□ 0.36
SCN4AP35499 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SCN4AP35499 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC17.29■□□□□ 0.36
SCN4AP35499 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SCN4AP35499 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SCN4AP35499 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SCN4AP35499 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms