Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC18.42■□□□□ 0.54
COL5A3P25940 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
COL5A3P25940 PCDHA1-201ENST00000378133 2726 ntBASIC18.42■□□□□ 0.54
COL5A3P25940 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.42■□□□□ 0.54
COL5A3P25940 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 HERC2P11-201ENST00000562845 725 ntBASIC18.42■□□□□ 0.54
COL5A3P25940 AC100756.2-201ENST00000569537 736 ntBASIC18.42■□□□□ 0.54
COL5A3P25940 AC010976.2-201ENST00000609697 852 ntBASIC18.42■□□□□ 0.54
COL5A3P25940 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.42■□□□□ 0.54
COL5A3P25940 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A3P25940 AL591122.2-201ENST00000624125 1853 ntBASIC18.42■□□□□ 0.54
COL5A3P25940 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
COL5A3P25940 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC18.41■□□□□ 0.54
COL5A3P25940 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A3P25940 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC18.41■□□□□ 0.54
COL5A3P25940 CELP-203ENST00000624767 2414 ntTSL 5 BASIC18.41■□□□□ 0.54
COL5A3P25940 AGGF1P1-201ENST00000509500 2073 ntBASIC18.41■□□□□ 0.54
COL5A3P25940 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A3P25940 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC18.41■□□□□ 0.54
COL5A3P25940 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A3P25940 AC084752.1-201ENST00000509766 622 ntBASIC18.41■□□□□ 0.54
COL5A3P25940 AC095040.1-201ENST00000513286 675 ntBASIC18.41■□□□□ 0.54
COL5A3P25940 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC18.41■□□□□ 0.54
COL5A3P25940 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC18.41■□□□□ 0.54
COL5A3P25940 DNM1P51-201ENST00000558149 522 ntBASIC18.41■□□□□ 0.54
COL5A3P25940 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
COL5A3P25940 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC18.41■□□□□ 0.54
COL5A3P25940 HKR1-225ENST00000592168 566 ntTSL 4 BASIC18.41■□□□□ 0.54
COL5A3P25940 AL133467.4-201ENST00000602953 725 ntBASIC18.41■□□□□ 0.54
COL5A3P25940 AC011471.3-201ENST00000623576 402 ntBASIC18.41■□□□□ 0.54
COL5A3P25940 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
COL5A3P25940 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A3P25940 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
COL5A3P25940 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A3P25940 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
COL5A3P25940 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC18.41■□□□□ 0.54
COL5A3P25940 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A3P25940 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A3P25940 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A3P25940 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
COL5A3P25940 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A3P25940 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A3P25940 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC18.41■□□□□ 0.54
COL5A3P25940 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A3P25940 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
COL5A3P25940 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A3P25940 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A3P25940 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A3P25940 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC18.4■□□□□ 0.54
COL5A3P25940 RN7SL564P-201ENST00000496309 250 ntBASIC18.4■□□□□ 0.54
COL5A3P25940 KLF17P1-201ENST00000547105 1126 ntBASIC18.4■□□□□ 0.54
COL5A3P25940 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC18.4■□□□□ 0.54
COL5A3P25940 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC18.4■□□□□ 0.54
COL5A3P25940 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A3P25940 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A3P25940 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.4■□□□□ 0.54
COL5A3P25940 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A3P25940 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A3P25940 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.4■□□□□ 0.54
COL5A3P25940 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.4■□□□□ 0.54
COL5A3P25940 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A3P25940 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A3P25940 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A3P25940 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
COL5A3P25940 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC18.4■□□□□ 0.54
COL5A3P25940 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC18.4■□□□□ 0.54
COL5A3P25940 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.4■□□□□ 0.54
COL5A3P25940 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC18.4■□□□□ 0.54
COL5A3P25940 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A3P25940 AC079328.2-201ENST00000561241 3354 ntBASIC18.4■□□□□ 0.54
COL5A3P25940 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.4■□□□□ 0.54
COL5A3P25940 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A3P25940 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A3P25940 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A3P25940 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A3P25940 HCG27-204ENST00000424675 895 ntTSL 3 BASIC18.4■□□□□ 0.54
COL5A3P25940 GCSHP3-201ENST00000431120 391 ntBASIC18.4■□□□□ 0.54
COL5A3P25940 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC18.4■□□□□ 0.54
COL5A3P25940 PPIA-208ENST00000489459 907 ntTSL 2 BASIC18.4■□□□□ 0.54
COL5A3P25940 AP003398.1-201ENST00000531124 318 ntBASIC18.4■□□□□ 0.54
COL5A3P25940 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC18.4■□□□□ 0.54
COL5A3P25940 RN7SL357P-201ENST00000581065 298 ntBASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms