Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SPTA1P02549 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SPTA1P02549 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC13.65□□□□□ -0.22
SPTA1P02549 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
SPTA1P02549 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
SPTA1P02549 AC073911.3-201ENST00000624401 631 ntBASIC13.65□□□□□ -0.22
SPTA1P02549 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SPTA1P02549 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
SPTA1P02549 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SPTA1P02549 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC13.65□□□□□ -0.22
SPTA1P02549 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC13.65□□□□□ -0.22
SPTA1P02549 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SPTA1P02549 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
SPTA1P02549 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
SPTA1P02549 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SPTA1P02549 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SPTA1P02549 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SPTA1P02549 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SPTA1P02549 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.65□□□□□ -0.22
SPTA1P02549 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SPTA1P02549 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC13.65□□□□□ -0.22
SPTA1P02549 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC13.65□□□□□ -0.22
SPTA1P02549 REXO1L5P-201ENST00000622260 2098 ntBASIC13.65□□□□□ -0.22
SPTA1P02549 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SPTA1P02549 COX20P1-201ENST00000366529 357 ntBASIC13.65□□□□□ -0.22
SPTA1P02549 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SPTA1P02549 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC13.65□□□□□ -0.22
SPTA1P02549 RPL7P35-201ENST00000446943 740 ntBASIC13.65□□□□□ -0.22
SPTA1P02549 TMCO5B-205ENST00000530020 894 ntBASIC13.65□□□□□ -0.22
SPTA1P02549 AL353622.2-201ENST00000605846 425 ntBASIC13.65□□□□□ -0.22
SPTA1P02549 AC002472.3-201ENST00000640124 621 ntBASIC13.65□□□□□ -0.22
SPTA1P02549 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SPTA1P02549 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC13.65□□□□□ -0.22
SPTA1P02549 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
SPTA1P02549 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SPTA1P02549 MBLAC2-202ENST00000514906 1936 ntBASIC13.65□□□□□ -0.22
SPTA1P02549 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SPTA1P02549 LINC01815-202ENST00000641468 1409 ntBASIC13.65□□□□□ -0.22
SPTA1P02549 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC13.65□□□□□ -0.22
SPTA1P02549 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
SPTA1P02549 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SPTA1P02549 FLJ38576-201ENST00000623820 2459 ntBASIC13.65□□□□□ -0.23
SPTA1P02549 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.23
SPTA1P02549 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
SPTA1P02549 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC13.65□□□□□ -0.23
SPTA1P02549 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SPTA1P02549 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
SPTA1P02549 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC13.64□□□□□ -0.23
SPTA1P02549 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
SPTA1P02549 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SPTA1P02549 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SPTA1P02549 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
SPTA1P02549 EIF3FP3-201ENST00000434851 1086 ntBASIC13.64□□□□□ -0.23
SPTA1P02549 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC13.64□□□□□ -0.23
SPTA1P02549 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC13.64□□□□□ -0.23
SPTA1P02549 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
SPTA1P02549 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC13.64□□□□□ -0.23
SPTA1P02549 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC13.64□□□□□ -0.23
SPTA1P02549 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SPTA1P02549 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC13.64□□□□□ -0.23
SPTA1P02549 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.64□□□□□ -0.23
SPTA1P02549 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SPTA1P02549 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SPTA1P02549 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC13.64□□□□□ -0.23
SPTA1P02549 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SPTA1P02549 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SPTA1P02549 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC13.64□□□□□ -0.23
SPTA1P02549 SHC1P1-201ENST00000425230 1745 ntBASIC13.64□□□□□ -0.23
SPTA1P02549 CEP83-AS1-201ENST00000623122 2482 ntBASIC13.64□□□□□ -0.23
SPTA1P02549 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
SPTA1P02549 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
SPTA1P02549 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SPTA1P02549 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
SPTA1P02549 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SPTA1P02549 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC13.64□□□□□ -0.23
SPTA1P02549 AC053503.3-201ENST00000448375 114 ntBASIC13.64□□□□□ -0.23
SPTA1P02549 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC13.64□□□□□ -0.23
SPTA1P02549 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
SPTA1P02549 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SPTA1P02549 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
SPTA1P02549 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SPTA1P02549 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
SPTA1P02549 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SPTA1P02549 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SPTA1P02549 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC13.64□□□□□ -0.23
SPTA1P02549 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC13.63□□□□□ -0.23
SPTA1P02549 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.63□□□□□ -0.23
SPTA1P02549 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SPTA1P02549 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
SPTA1P02549 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC13.63□□□□□ -0.23
SPTA1P02549 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SPTA1P02549 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
SPTA1P02549 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC13.63□□□□□ -0.23
SPTA1P02549 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC13.63□□□□□ -0.23
SPTA1P02549 IGHV3-37-201ENST00000518544 340 ntBASIC13.63□□□□□ -0.23
SPTA1P02549 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC13.63□□□□□ -0.23
SPTA1P02549 PHBP15-201ENST00000574228 665 ntBASIC13.63□□□□□ -0.23
SPTA1P02549 NUDT4P2-201ENST00000578341 546 ntBASIC13.63□□□□□ -0.23
SPTA1P02549 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
SPTA1P02549 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms