Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 AL512356.2-201ENST00000546955 174 ntBASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 AC000095.1-201ENST00000603208 874 ntBASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 TEX28P1-201ENST00000613479 1221 ntBASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 TEX28P2-201ENST00000617764 1221 ntBASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 SPDYE12P-201ENST00000618416 771 ntBASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 AC018665.1-201ENST00000622927 1362 ntBASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 CENPM-206ENST00000407253 818 ntTSL 2 BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 HLA-V-204ENST00000476601 1289 ntBASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM49D1C9J1S8 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
TRIM49D1C9J1S8 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.21■□□□□ 0.02
TRIM49D1C9J1S8 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 AL354702.1-201ENST00000442006 1960 ntBASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 AC112482.1-201ENST00000492080 688 ntBASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 AC004066.1-201ENST00000502488 802 ntBASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 SDHAP3-202ENST00000515467 728 ntBASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 AC022447.6-201ENST00000515522 438 ntBASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 AC010327.4-202ENST00000591484 748 ntBASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 AL138828.2-201ENST00000615812 383 ntBASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms