Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.48□□□□□ -0.25
MMP28Q9H239 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC13.48□□□□□ -0.25
MMP28Q9H239 AL645939.2-201ENST00000427340 991 ntBASIC13.48□□□□□ -0.25
MMP28Q9H239 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC13.48□□□□□ -0.25
MMP28Q9H239 KRT18P34-201ENST00000488218 1270 ntBASIC13.48□□□□□ -0.25
MMP28Q9H239 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
MMP28Q9H239 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC13.48□□□□□ -0.25
MMP28Q9H239 AC005829.1-201ENST00000570002 483 ntBASIC13.48□□□□□ -0.25
MMP28Q9H239 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC13.48□□□□□ -0.25
MMP28Q9H239 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC13.48□□□□□ -0.25
MMP28Q9H239 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC13.48□□□□□ -0.25
MMP28Q9H239 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC13.48□□□□□ -0.25
MMP28Q9H239 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.48□□□□□ -0.25
MMP28Q9H239 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC13.48□□□□□ -0.25
MMP28Q9H239 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC13.48□□□□□ -0.25
MMP28Q9H239 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC13.48□□□□□ -0.25
MMP28Q9H239 AC015802.1-201ENST00000588104 1449 ntBASIC13.47□□□□□ -0.25
MMP28Q9H239 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
MMP28Q9H239 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC13.47□□□□□ -0.25
MMP28Q9H239 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
MMP28Q9H239 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC13.47□□□□□ -0.25
MMP28Q9H239 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
MMP28Q9H239 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
MMP28Q9H239 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.47□□□□□ -0.25
MMP28Q9H239 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
MMP28Q9H239 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
MMP28Q9H239 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC13.47□□□□□ -0.25
MMP28Q9H239 MCCD1P2-201ENST00000423228 335 ntBASIC13.47□□□□□ -0.25
MMP28Q9H239 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC13.47□□□□□ -0.25
MMP28Q9H239 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC13.47□□□□□ -0.25
MMP28Q9H239 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC13.47□□□□□ -0.25
MMP28Q9H239 CFL1-202ENST00000524553 860 ntTSL 2 BASIC13.47□□□□□ -0.25
MMP28Q9H239 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
MMP28Q9H239 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC13.47□□□□□ -0.25
MMP28Q9H239 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC13.47□□□□□ -0.25
MMP28Q9H239 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC13.47□□□□□ -0.25
MMP28Q9H239 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC13.47□□□□□ -0.25
MMP28Q9H239 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC13.47□□□□□ -0.25
MMP28Q9H239 AL078644.1-201ENST00000609881 752 ntBASIC13.47□□□□□ -0.25
MMP28Q9H239 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
MMP28Q9H239 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC13.47□□□□□ -0.25
MMP28Q9H239 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC13.47□□□□□ -0.25
MMP28Q9H239 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
MMP28Q9H239 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC13.47□□□□□ -0.25
MMP28Q9H239 AC015909.5-201ENST00000624336 2266 ntBASIC13.47□□□□□ -0.25
MMP28Q9H239 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.47□□□□□ -0.25
MMP28Q9H239 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.47□□□□□ -0.25
MMP28Q9H239 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC13.47□□□□□ -0.25
MMP28Q9H239 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MMP28Q9H239 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.47□□□□□ -0.25
MMP28Q9H239 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
MMP28Q9H239 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
MMP28Q9H239 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
MMP28Q9H239 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC13.46□□□□□ -0.25
MMP28Q9H239 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
MMP28Q9H239 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC13.46□□□□□ -0.25
MMP28Q9H239 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC13.46□□□□□ -0.25
MMP28Q9H239 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC13.46□□□□□ -0.25
MMP28Q9H239 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
MMP28Q9H239 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
MMP28Q9H239 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
MMP28Q9H239 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC13.46□□□□□ -0.25
MMP28Q9H239 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
MMP28Q9H239 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
MMP28Q9H239 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms