Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC42Q96M95 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CCDC42Q96M95 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CCDC42Q96M95 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC42Q96M95 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC42Q96M95 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC42Q96M95 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
CCDC42Q96M95 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC16.39■□□□□ 0.22
CCDC42Q96M95 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
CCDC42Q96M95 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC42Q96M95 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CCDC42Q96M95 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC42Q96M95 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC42Q96M95 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC42Q96M95 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC42Q96M95 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
CCDC42Q96M95 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC42Q96M95 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC42Q96M95 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.39■□□□□ 0.21
CCDC42Q96M95 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC42Q96M95 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.39■□□□□ 0.21
CCDC42Q96M95 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC42Q96M95 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC42Q96M95 AC004066.1-201ENST00000502488 802 ntBASIC16.39■□□□□ 0.21
CCDC42Q96M95 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
CCDC42Q96M95 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CCDC42Q96M95 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CCDC42Q96M95 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC42Q96M95 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CCDC42Q96M95 INO80C-210ENST00000590757 595 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC42Q96M95 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CCDC42Q96M95 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC16.39■□□□□ 0.21
CCDC42Q96M95 AC152010.1-201ENST00000415779 2006 ntBASIC16.39■□□□□ 0.21
CCDC42Q96M95 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC42Q96M95 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC42Q96M95 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC42Q96M95 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC42Q96M95 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC42Q96M95 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC42Q96M95 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC42Q96M95 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC42Q96M95 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC42Q96M95 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC42Q96M95 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC42Q96M95 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CCDC42Q96M95 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 AC211486.1-202ENST00000416371 468 ntBASIC16.38■□□□□ 0.21
CCDC42Q96M95 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 AC211476.1-201ENST00000503899 468 ntBASIC16.38■□□□□ 0.21
CCDC42Q96M95 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 AL138828.2-201ENST00000615812 383 ntBASIC16.38■□□□□ 0.21
CCDC42Q96M95 SPDYE12P-201ENST00000618416 771 ntBASIC16.38■□□□□ 0.21
CCDC42Q96M95 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 AL157414.3-201ENST00000624276 1954 ntBASIC16.38■□□□□ 0.21
CCDC42Q96M95 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC42Q96M95 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CCDC42Q96M95 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC42Q96M95 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms