Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 INO80C-210ENST00000590757 595 ntTSL 2 BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 OR2I1P-209ENST00000641730 5365 ntBASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 AC067863.1-201ENST00000494933 530 ntBASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 MEIS3P1-201ENST00000495167 958 ntBASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 AC008738.7-201ENST00000609744 511 ntBASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 AC004790.1-201ENST00000612686 536 ntBASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 AC004840.1-201ENST00000636359 365 ntBASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 AC079781.4-201ENST00000641908 219 ntBASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 AL365209.1-201ENST00000624418 6473 ntBASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
ATG4AQ8WYN0 MIR600HG-201ENST00000449175 5984 ntBASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 AL158070.2-201ENST00000623713 1621 ntBASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 AC241585.1-201ENST00000433527 519 ntBASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 AP001160.2-201ENST00000596071 487 ntBASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 AL390754.1-201ENST00000619088 582 ntBASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms