Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 ACTG1P3-201ENST00000431775 1114 ntBASIC4.73□□□□□ -1.65
SYNE1Q8NF91 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 TDH-203ENST00000531764 1110 ntBASIC4.73□□□□□ -1.65
SYNE1Q8NF91 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 TECR-220ENST00000600083 1204 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 TSPEAR-201ENST00000323084 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 ASPH-201ENST00000356457 3730 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 PKD1P1-201ENST00000458669 6805 ntBASIC4.73□□□□□ -1.65
SYNE1Q8NF91 MCF2L-213ENST00000421756 3560 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 APOC3-202ENST00000375345 604 ntTSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 FAM197Y7-201ENST00000432892 766 ntBASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 RN7SL48P-201ENST00000579283 293 ntBASIC4.73□□□□□ -1.65
SYNE1Q8NF91 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AC026979.3-201ENST00000607315 403 ntBASIC4.73□□□□□ -1.65
SYNE1Q8NF91 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 ETV2-208ENST00000621247 941 ntTSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 GYG2-204ENST00000381163 3393 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AC018735.1-201ENST00000437208 1502 ntBASIC4.73□□□□□ -1.65
SYNE1Q8NF91 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AC006033.1-201ENST00000440505 426 ntBASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 PRSS30P-206ENST00000641773 873 ntBASIC4.73□□□□□ -1.65
SYNE1Q8NF91 TNN-202ENST00000621086 4234 ntTSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 GSN-203ENST00000373808 2664 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 DOC2GP-204ENST00000639052 2548 ntBASIC4.73□□□□□ -1.65
SYNE1Q8NF91 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 PTP4A1P2-201ENST00000546033 454 ntBASIC4.73□□□□□ -1.65
SYNE1Q8NF91 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 ZFAND3-201ENST00000287218 3366 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 MAP7D2-202ENST00000379651 3930 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 GNG7-201ENST00000382159 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 SYNRG-229ENST00000621136 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 RIN2-201ENST00000255006 4505 ntAPPRIS P2 TSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms