Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
VPS8Q8N3P4 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC23.27■■□□□ 1.32
VPS8Q8N3P4 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC23.27■■□□□ 1.31
VPS8Q8N3P4 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 HIST2H2BC-201ENST00000498492 580 ntBASIC23.26■■□□□ 1.31
VPS8Q8N3P4 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 DIO1-215ENST00000610607 796 ntTSL 5 BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 CYP4F23P-201ENST00000593402 1579 ntBASIC23.26■■□□□ 1.31
VPS8Q8N3P4 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 TMBIM7P-202ENST00000641474 1516 ntBASIC23.26■■□□□ 1.31
VPS8Q8N3P4 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
VPS8Q8N3P4 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 SDCCAG3P2-201ENST00000326105 1023 ntBASIC23.25■■□□□ 1.31
VPS8Q8N3P4 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 SDHD-202ENST00000525291 790 ntTSL 3 BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 AP001258.2-201ENST00000529891 490 ntBASIC23.25■■□□□ 1.31
VPS8Q8N3P4 AL160314.3-201ENST00000556041 767 ntBASIC23.25■■□□□ 1.31
VPS8Q8N3P4 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 AC027601.3-201ENST00000622907 509 ntBASIC23.25■■□□□ 1.31
VPS8Q8N3P4 AL139099.5-201ENST00000635274 300 ntBASIC23.25■■□□□ 1.31
VPS8Q8N3P4 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 MARK2P5-201ENST00000507649 634 ntBASIC23.25■■□□□ 1.31
VPS8Q8N3P4 NOP2-211ENST00000540228 668 ntTSL 2 BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
VPS8Q8N3P4 AC138649.2-201ENST00000615886 705 ntBASIC23.25■■□□□ 1.31
VPS8Q8N3P4 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 AC138028.6-201ENST00000616106 1482 ntBASIC23.24■■□□□ 1.31
VPS8Q8N3P4 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC23.24■■□□□ 1.31
VPS8Q8N3P4 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS8Q8N3P4 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
VPS8Q8N3P4 USP35-204ENST00000530267 2419 ntTSL 2 BASIC23.23■■□□□ 1.31
VPS8Q8N3P4 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
VPS8Q8N3P4 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC23.23■■□□□ 1.31
VPS8Q8N3P4 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
VPS8Q8N3P4 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC23.23■■□□□ 1.31
VPS8Q8N3P4 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC23.23■■□□□ 1.31
VPS8Q8N3P4 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
VPS8Q8N3P4 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
VPS8Q8N3P4 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
VPS8Q8N3P4 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
VPS8Q8N3P4 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
VPS8Q8N3P4 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC23.23■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms