Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 HARS-202ENST00000415192 1401 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 KRTAP10-13P-201ENST00000412914 571 ntBASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 GPAA1P2-201ENST00000417923 928 ntBASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 AC002472.3-201ENST00000640124 621 ntBASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC60Q8IWA6 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 ZBED1P1-201ENST00000502364 1930 ntBASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 SERF2-209ENST00000409646 559 ntTSL 4 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 APOA2-204ENST00000464492 530 ntTSL 3 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 AC005730.2-201ENST00000564549 1184 ntBASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 KLK11-210ENST00000600362 759 ntTSL 3 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 AL022328.3-201ENST00000607943 679 ntBASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC60Q8IWA6 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms