Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC12.28□□□□□ -0.44
CX3CL1P78423 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC12.28□□□□□ -0.44
CX3CL1P78423 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
CX3CL1P78423 ABR-205ENST00000544583 5595 ntTSL 2 BASIC12.28□□□□□ -0.44
CX3CL1P78423 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC12.28□□□□□ -0.44
CX3CL1P78423 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
CX3CL1P78423 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC12.28□□□□□ -0.44
CX3CL1P78423 SLC7A15P-201ENST00000424028 1363 ntBASIC12.28□□□□□ -0.44
CX3CL1P78423 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC12.28□□□□□ -0.44
CX3CL1P78423 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
CX3CL1P78423 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
CX3CL1P78423 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
CX3CL1P78423 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
CX3CL1P78423 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.44
CX3CL1P78423 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
CX3CL1P78423 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
CX3CL1P78423 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
CX3CL1P78423 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.44
CX3CL1P78423 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
CX3CL1P78423 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
CX3CL1P78423 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
CX3CL1P78423 PPP1R26P4-201ENST00000619065 3527 ntBASIC12.27□□□□□ -0.44
CX3CL1P78423 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
CX3CL1P78423 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.44
CX3CL1P78423 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC12.27□□□□□ -0.44
CX3CL1P78423 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
CX3CL1P78423 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC12.27□□□□□ -0.45
CX3CL1P78423 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
CX3CL1P78423 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 MIR661-201ENST00000384842 89 ntBASIC12.27□□□□□ -0.45
CX3CL1P78423 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 AC236430.1-201ENST00000402231 743 ntBASIC12.27□□□□□ -0.45
CX3CL1P78423 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 AC002472.2-201ENST00000442739 958 ntBASIC12.27□□□□□ -0.45
CX3CL1P78423 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 OARD1-208ENST00000469104 704 ntTSL 2 BASIC12.27□□□□□ -0.45
CX3CL1P78423 AC104596.2-201ENST00000512793 793 ntBASIC12.27□□□□□ -0.45
CX3CL1P78423 FADS2-205ENST00000517839 469 ntTSL 3 BASIC12.27□□□□□ -0.45
CX3CL1P78423 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC12.27□□□□□ -0.45
CX3CL1P78423 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC12.27□□□□□ -0.45
CX3CL1P78423 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC12.27□□□□□ -0.45
CX3CL1P78423 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC12.27□□□□□ -0.45
CX3CL1P78423 AL132655.2-201ENST00000596276 594 ntBASIC12.27□□□□□ -0.45
CX3CL1P78423 AC099568.2-201ENST00000609194 695 ntBASIC12.27□□□□□ -0.45
CX3CL1P78423 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC12.27□□□□□ -0.45
CX3CL1P78423 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
CX3CL1P78423 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC12.27□□□□□ -0.45
CX3CL1P78423 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC12.27□□□□□ -0.45
CX3CL1P78423 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
CX3CL1P78423 AL645728.2-202ENST00000641679 227 ntBASIC12.27□□□□□ -0.45
CX3CL1P78423 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC12.27□□□□□ -0.45
CX3CL1P78423 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC12.27□□□□□ -0.45
CX3CL1P78423 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
CX3CL1P78423 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
CX3CL1P78423 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
CX3CL1P78423 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC12.27□□□□□ -0.45
CX3CL1P78423 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 ARHGAP23P1-201ENST00000562773 1937 ntBASIC12.27□□□□□ -0.45
CX3CL1P78423 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC12.27□□□□□ -0.45
CX3CL1P78423 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CX3CL1P78423 AGAP7P-201ENST00000582299 2062 ntBASIC12.26□□□□□ -0.45
CX3CL1P78423 AGAP14-201ENST00000624701 2060 ntBASIC12.26□□□□□ -0.45
CX3CL1P78423 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
CX3CL1P78423 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC12.26□□□□□ -0.45
CX3CL1P78423 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
CX3CL1P78423 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 AC041040.2-201ENST00000622926 2899 ntBASIC12.26□□□□□ -0.45
CX3CL1P78423 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms