Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LMO4P61968 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
LMO4P61968 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
LMO4P61968 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC12.32□□□□□ -0.44
LMO4P61968 AL162727.3-201ENST00000635661 2787 ntBASIC12.32□□□□□ -0.44
LMO4P61968 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
LMO4P61968 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
LMO4P61968 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC12.32□□□□□ -0.44
LMO4P61968 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC12.32□□□□□ -0.44
LMO4P61968 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LMO4P61968 AC244394.1-201ENST00000435000 1665 ntBASIC12.32□□□□□ -0.44
LMO4P61968 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LMO4P61968 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
LMO4P61968 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
LMO4P61968 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC12.31□□□□□ -0.44
LMO4P61968 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
LMO4P61968 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
LMO4P61968 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
LMO4P61968 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC12.31□□□□□ -0.44
LMO4P61968 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC12.31□□□□□ -0.44
LMO4P61968 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
LMO4P61968 AMT-239ENST00000636865 1914 ntTSL 5 BASIC12.31□□□□□ -0.44
LMO4P61968 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC12.31□□□□□ -0.44
LMO4P61968 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC12.31□□□□□ -0.44
LMO4P61968 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 PCDHGB8P-201ENST00000502926 1973 ntBASIC12.31□□□□□ -0.44
LMO4P61968 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
LMO4P61968 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC12.31□□□□□ -0.44
LMO4P61968 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 AC012441.2-201ENST00000444843 739 ntBASIC12.31□□□□□ -0.44
LMO4P61968 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
LMO4P61968 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC12.31□□□□□ -0.44
LMO4P61968 GCOM2-201ENST00000509133 1104 ntBASIC12.31□□□□□ -0.44
LMO4P61968 RNA5SP423-201ENST00000517127 109 ntBASIC12.31□□□□□ -0.44
LMO4P61968 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC12.31□□□□□ -0.44
LMO4P61968 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
LMO4P61968 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC12.31□□□□□ -0.44
LMO4P61968 VPS18-202ENST00000558474 873 ntTSL 3 BASIC12.31□□□□□ -0.44
LMO4P61968 SYT17-208ENST00000568433 812 ntTSL 3 BASIC12.31□□□□□ -0.44
LMO4P61968 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
LMO4P61968 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 AC091544.8-201ENST00000619490 361 ntBASIC12.31□□□□□ -0.44
LMO4P61968 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC12.31□□□□□ -0.44
LMO4P61968 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 AL805961.1-203ENST00000641078 1258 ntBASIC12.31□□□□□ -0.44
LMO4P61968 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC12.31□□□□□ -0.44
LMO4P61968 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC12.31□□□□□ -0.44
LMO4P61968 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
LMO4P61968 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 PGR-210ENST00000619228 3038 ntTSL 5 BASIC12.31□□□□□ -0.44
LMO4P61968 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC12.31□□□□□ -0.44
LMO4P61968 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC12.31□□□□□ -0.44
LMO4P61968 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
LMO4P61968 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC12.3□□□□□ -0.44
LMO4P61968 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LMO4P61968 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LMO4P61968 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LMO4P61968 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC12.3□□□□□ -0.44
LMO4P61968 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LMO4P61968 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
LMO4P61968 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LMO4P61968 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LMO4P61968 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC12.3□□□□□ -0.44
LMO4P61968 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LMO4P61968 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LMO4P61968 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LMO4P61968 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LMO4P61968 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC12.3□□□□□ -0.44
LMO4P61968 AC008741.2-201ENST00000612792 3115 ntBASIC12.3□□□□□ -0.44
LMO4P61968 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LMO4P61968 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
LMO4P61968 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
LMO4P61968 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC12.3□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms