Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC13.97□□□□□ -0.17
CDH11P55287 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CDH11P55287 R3HDM2P2-201ENST00000401880 2116 ntBASIC13.97□□□□□ -0.17
CDH11P55287 AP000845.1-201ENST00000581677 2131 ntBASIC13.97□□□□□ -0.17
CDH11P55287 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH11P55287 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH11P55287 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH11P55287 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC13.97□□□□□ -0.17
CDH11P55287 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
CDH11P55287 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC13.97□□□□□ -0.17
CDH11P55287 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDH11P55287 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH11P55287 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDH11P55287 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
CDH11P55287 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC13.96□□□□□ -0.17
CDH11P55287 MTHFR-210ENST00000641407 2387 ntBASIC13.96□□□□□ -0.17
CDH11P55287 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC13.96□□□□□ -0.17
CDH11P55287 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.96□□□□□ -0.17
CDH11P55287 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.96□□□□□ -0.17
CDH11P55287 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 AC104581.4-201ENST00000623126 3052 ntBASIC13.96□□□□□ -0.17
CDH11P55287 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC13.96□□□□□ -0.17
CDH11P55287 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.96□□□□□ -0.17
CDH11P55287 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
CDH11P55287 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC13.96□□□□□ -0.17
CDH11P55287 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC13.96□□□□□ -0.17
CDH11P55287 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC13.96□□□□□ -0.17
CDH11P55287 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC13.96□□□□□ -0.17
CDH11P55287 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC13.96□□□□□ -0.17
CDH11P55287 CRB3P1-201ENST00000449338 276 ntBASIC13.96□□□□□ -0.17
CDH11P55287 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 REEP4-207ENST00000523293 913 ntTSL 3 BASIC13.96□□□□□ -0.17
CDH11P55287 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC13.96□□□□□ -0.17
CDH11P55287 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC13.96□□□□□ -0.17
CDH11P55287 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC13.96□□□□□ -0.17
CDH11P55287 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC13.96□□□□□ -0.17
CDH11P55287 AC027307.3-201ENST00000594262 1100 ntBASIC13.96□□□□□ -0.17
CDH11P55287 AL844908.2-201ENST00000609461 460 ntBASIC13.96□□□□□ -0.17
CDH11P55287 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC13.96□□□□□ -0.17
CDH11P55287 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH11P55287 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
CDH11P55287 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.18
CDH11P55287 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
CDH11P55287 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
CDH11P55287 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.18
CDH11P55287 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
CDH11P55287 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.18
CDH11P55287 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
CDH11P55287 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.18
CDH11P55287 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CDH11P55287 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDH11P55287 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.95□□□□□ -0.18
CDH11P55287 MPI-203ENST00000535694 1523 ntTSL 2 BASIC13.95□□□□□ -0.18
CDH11P55287 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDH11P55287 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDH11P55287 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDH11P55287 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CDH11P55287 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
CDH11P55287 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
CDH11P55287 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC13.95□□□□□ -0.18
CDH11P55287 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDH11P55287 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
CDH11P55287 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDH11P55287 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CDH11P55287 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDH11P55287 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CDH11P55287 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CDH11P55287 PIN1P1-201ENST00000412108 996 ntBASIC13.95□□□□□ -0.18
CDH11P55287 AC005034.1-201ENST00000426657 489 ntBASIC13.95□□□□□ -0.18
CDH11P55287 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC13.95□□□□□ -0.18
CDH11P55287 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CDH11P55287 TMPRSS11CP-201ENST00000453277 683 ntBASIC13.95□□□□□ -0.18
CDH11P55287 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDH11P55287 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 147.8 ms