Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
VCPP55072 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
VCPP55072 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC16.26■□□□□ 0.19
VCPP55072 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC16.26■□□□□ 0.19
VCPP55072 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 HIST2H2BC-201ENST00000498492 580 ntBASIC16.26■□□□□ 0.19
VCPP55072 ENPP7P5-201ENST00000541031 1031 ntBASIC16.26■□□□□ 0.19
VCPP55072 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.26■□□□□ 0.19
VCPP55072 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC16.26■□□□□ 0.19
VCPP55072 KC6-205ENST00000599934 556 ntTSL 4 BASIC16.26■□□□□ 0.19
VCPP55072 AL049840.4-201ENST00000602422 811 ntBASIC16.26■□□□□ 0.19
VCPP55072 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.26■□□□□ 0.19
VCPP55072 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.26■□□□□ 0.19
VCPP55072 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC16.26■□□□□ 0.19
VCPP55072 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
VCPP55072 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
VCPP55072 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 C1R-202ENST00000536053 2347 ntTSL 2 BASIC16.26■□□□□ 0.19
VCPP55072 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC16.26■□□□□ 0.19
VCPP55072 AC138028.6-201ENST00000616106 1482 ntBASIC16.26■□□□□ 0.19
VCPP55072 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.26■□□□□ 0.19
VCPP55072 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.26■□□□□ 0.19
VCPP55072 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
VCPP55072 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.26■□□□□ 0.19
VCPP55072 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC16.26■□□□□ 0.19
VCPP55072 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.26■□□□□ 0.19
VCPP55072 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
VCPP55072 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.25■□□□□ 0.19
VCPP55072 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
VCPP55072 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.25■□□□□ 0.19
VCPP55072 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.25■□□□□ 0.19
VCPP55072 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC16.25■□□□□ 0.19
VCPP55072 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
VCPP55072 KRT8P19-201ENST00000551916 1455 ntBASIC16.25■□□□□ 0.19
VCPP55072 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
VCPP55072 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
VCPP55072 RPS3-201ENST00000278572 907 ntTSL 3 BASIC16.25■□□□□ 0.19
VCPP55072 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC16.25■□□□□ 0.19
VCPP55072 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.25■□□□□ 0.19
VCPP55072 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
VCPP55072 BAATP1-201ENST00000412284 1225 ntBASIC16.25■□□□□ 0.19
VCPP55072 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
VCPP55072 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC16.25■□□□□ 0.19
VCPP55072 FAM86LP-201ENST00000478302 853 ntBASIC16.25■□□□□ 0.19
VCPP55072 RPL8-205ENST00000527914 551 ntTSL 3 BASIC16.25■□□□□ 0.19
VCPP55072 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.25■□□□□ 0.19
VCPP55072 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC16.25■□□□□ 0.19
VCPP55072 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.25■□□□□ 0.19
VCPP55072 AC124283.3-201ENST00000570869 594 ntBASIC16.25■□□□□ 0.19
VCPP55072 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC16.25■□□□□ 0.19
VCPP55072 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC16.25■□□□□ 0.19
VCPP55072 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC16.25■□□□□ 0.19
VCPP55072 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 MIR7845-201ENST00000618396 99 ntBASIC16.25■□□□□ 0.19
VCPP55072 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.25■□□□□ 0.19
VCPP55072 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCPP55072 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.25■□□□□ 0.19
VCPP55072 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.25■□□□□ 0.19
VCPP55072 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms