Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC18.39■□□□□ 0.54
NUP98P52948 AC087045.2-201ENST00000606279 1003 ntBASIC18.39■□□□□ 0.54
NUP98P52948 AC092171.5-201ENST00000608012 942 ntBASIC18.39■□□□□ 0.54
NUP98P52948 AC009145.4-201ENST00000625119 1294 ntBASIC18.39■□□□□ 0.54
NUP98P52948 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.39■□□□□ 0.54
NUP98P52948 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
NUP98P52948 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC18.39■□□□□ 0.54
NUP98P52948 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC18.39■□□□□ 0.54
NUP98P52948 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.54
NUP98P52948 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC18.39■□□□□ 0.54
NUP98P52948 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
NUP98P52948 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.54
NUP98P52948 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.54
NUP98P52948 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
NUP98P52948 AC074138.1-201ENST00000611182 1303 ntBASIC18.39■□□□□ 0.54
NUP98P52948 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NUP98P52948 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC18.39■□□□□ 0.53
NUP98P52948 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
NUP98P52948 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.39■□□□□ 0.53
NUP98P52948 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NUP98P52948 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC18.39■□□□□ 0.53
NUP98P52948 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NUP98P52948 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NUP98P52948 AL627422.1-201ENST00000434104 580 ntBASIC18.39■□□□□ 0.53
NUP98P52948 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC18.39■□□□□ 0.53
NUP98P52948 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC18.39■□□□□ 0.53
NUP98P52948 IGHV3-37-201ENST00000518544 340 ntBASIC18.39■□□□□ 0.53
NUP98P52948 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC18.39■□□□□ 0.53
NUP98P52948 MBP-227ENST00000526111 581 ntTSL 4 BASIC18.39■□□□□ 0.53
NUP98P52948 AC135983.4-201ENST00000564116 1262 ntBASIC18.39■□□□□ 0.53
NUP98P52948 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC18.39■□□□□ 0.53
NUP98P52948 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
NUP98P52948 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC18.39■□□□□ 0.53
NUP98P52948 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC18.39■□□□□ 0.53
NUP98P52948 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC18.39■□□□□ 0.53
NUP98P52948 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
NUP98P52948 AGAP7P-201ENST00000582299 2062 ntBASIC18.39■□□□□ 0.53
NUP98P52948 AGAP14-201ENST00000624701 2060 ntBASIC18.39■□□□□ 0.53
NUP98P52948 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC18.39■□□□□ 0.53
NUP98P52948 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NUP98P52948 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC18.39■□□□□ 0.53
NUP98P52948 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP98P52948 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC18.38■□□□□ 0.53
NUP98P52948 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
NUP98P52948 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC18.38■□□□□ 0.53
NUP98P52948 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP98P52948 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NUP98P52948 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP98P52948 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP98P52948 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP98P52948 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP98P52948 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NUP98P52948 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
NUP98P52948 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
NUP98P52948 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
NUP98P52948 AC009093.10-201ENST00000641956 1442 ntBASIC18.38■□□□□ 0.53
NUP98P52948 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
NUP98P52948 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP98P52948 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP98P52948 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
NUP98P52948 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
NUP98P52948 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP98P52948 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
NUP98P52948 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC18.37■□□□□ 0.53
NUP98P52948 ORAOV1P1-201ENST00000503108 395 ntBASIC18.37■□□□□ 0.53
NUP98P52948 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC18.37■□□□□ 0.53
NUP98P52948 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC18.37■□□□□ 0.53
NUP98P52948 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC18.37■□□□□ 0.53
NUP98P52948 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC18.37■□□□□ 0.53
NUP98P52948 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC18.37■□□□□ 0.53
NUP98P52948 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
NUP98P52948 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC18.37■□□□□ 0.53
NUP98P52948 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC18.37■□□□□ 0.53
NUP98P52948 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC18.37■□□□□ 0.53
NUP98P52948 AL627231.1-201ENST00000394467 1125 ntBASIC18.37■□□□□ 0.53
NUP98P52948 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 BANF1P3-201ENST00000412556 261 ntBASIC18.37■□□□□ 0.53
NUP98P52948 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 AC026320.2-201ENST00000434379 478 ntBASIC18.37■□□□□ 0.53
NUP98P52948 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC18.37■□□□□ 0.53
NUP98P52948 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
NUP98P52948 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 135.5 ms