Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4BO75351 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.93□□□□□ -0.02
VPS4BO75351 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
VPS4BO75351 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.93□□□□□ -0.02
VPS4BO75351 GNAQP1-201ENST00000444815 1067 ntBASIC14.93□□□□□ -0.02
VPS4BO75351 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC14.93□□□□□ -0.02
VPS4BO75351 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.93□□□□□ -0.02
VPS4BO75351 AC093004.1-201ENST00000508850 424 ntBASIC14.93□□□□□ -0.02
VPS4BO75351 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.93□□□□□ -0.02
VPS4BO75351 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14.93□□□□□ -0.02
VPS4BO75351 AC008494.3-201ENST00000606615 944 ntBASIC14.93□□□□□ -0.02
VPS4BO75351 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4BO75351 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4BO75351 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
VPS4BO75351 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4BO75351 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4BO75351 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
VPS4BO75351 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4BO75351 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4BO75351 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
VPS4BO75351 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
VPS4BO75351 Z97205.2-201ENST00000564697 1639 ntBASIC14.92□□□□□ -0.02
VPS4BO75351 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
VPS4BO75351 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
VPS4BO75351 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
VPS4BO75351 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.92□□□□□ -0.02
VPS4BO75351 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.92□□□□□ -0.02
VPS4BO75351 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.92□□□□□ -0.02
VPS4BO75351 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.92□□□□□ -0.02
VPS4BO75351 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.92□□□□□ -0.02
VPS4BO75351 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.92□□□□□ -0.02
VPS4BO75351 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
VPS4BO75351 AC079776.1-201ENST00000401540 1152 ntBASIC14.92□□□□□ -0.02
VPS4BO75351 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.92□□□□□ -0.02
VPS4BO75351 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.92□□□□□ -0.02
VPS4BO75351 AC234783.1-201ENST00000441761 496 ntBASIC14.92□□□□□ -0.02
VPS4BO75351 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.92□□□□□ -0.02
VPS4BO75351 AC022210.1-201ENST00000449856 793 ntBASIC14.92□□□□□ -0.02
VPS4BO75351 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 FAM8A2P-201ENST00000528813 1142 ntBASIC14.92□□□□□ -0.02
VPS4BO75351 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.92□□□□□ -0.02
VPS4BO75351 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
VPS4BO75351 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.92□□□□□ -0.02
VPS4BO75351 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.92□□□□□ -0.02
VPS4BO75351 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.92□□□□□ -0.02
VPS4BO75351 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.92□□□□□ -0.02
VPS4BO75351 AL844908.2-201ENST00000609461 460 ntBASIC14.92□□□□□ -0.02
VPS4BO75351 AC004840.1-201ENST00000636359 365 ntBASIC14.92□□□□□ -0.02
VPS4BO75351 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
VPS4BO75351 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
VPS4BO75351 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.92□□□□□ -0.02
VPS4BO75351 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
VPS4BO75351 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
VPS4BO75351 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.92□□□□□ -0.02
VPS4BO75351 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.92□□□□□ -0.02
VPS4BO75351 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS4BO75351 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
VPS4BO75351 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
VPS4BO75351 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS4BO75351 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 AL359258.3-201ENST00000622910 2331 ntBASIC14.91□□□□□ -0.02
VPS4BO75351 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.91□□□□□ -0.02
VPS4BO75351 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 SPDYE19P-201ENST00000338590 713 ntBASIC14.91□□□□□ -0.02
VPS4BO75351 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.91□□□□□ -0.02
VPS4BO75351 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.91□□□□□ -0.02
VPS4BO75351 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
VPS4BO75351 RPL37AP1-201ENST00000412502 279 ntBASIC14.91□□□□□ -0.02
VPS4BO75351 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.91□□□□□ -0.02
VPS4BO75351 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS4BO75351 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms