Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
SLC28A1O00337 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SLC28A1O00337 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.62□□□□□ -0.07
SLC28A1O00337 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.62□□□□□ -0.07
SLC28A1O00337 NUS1P3-201ENST00000423502 862 ntBASIC14.62□□□□□ -0.07
SLC28A1O00337 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SLC28A1O00337 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.62□□□□□ -0.07
SLC28A1O00337 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
SLC28A1O00337 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.62□□□□□ -0.07
SLC28A1O00337 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.62□□□□□ -0.07
SLC28A1O00337 AC026410.3-201ENST00000514280 936 ntBASIC14.62□□□□□ -0.07
SLC28A1O00337 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.62□□□□□ -0.07
SLC28A1O00337 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.62□□□□□ -0.07
SLC28A1O00337 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.62□□□□□ -0.07
SLC28A1O00337 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.62□□□□□ -0.07
SLC28A1O00337 RARRES2P5-201ENST00000564013 466 ntBASIC14.62□□□□□ -0.07
SLC28A1O00337 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.62□□□□□ -0.07
SLC28A1O00337 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
SLC28A1O00337 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.62□□□□□ -0.07
SLC28A1O00337 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.62□□□□□ -0.07
SLC28A1O00337 AC015802.1-201ENST00000588104 1449 ntBASIC14.62□□□□□ -0.07
SLC28A1O00337 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.62□□□□□ -0.07
SLC28A1O00337 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.62□□□□□ -0.07
SLC28A1O00337 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SLC28A1O00337 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.62□□□□□ -0.07
SLC28A1O00337 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SLC28A1O00337 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
SLC28A1O00337 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SLC28A1O00337 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SLC28A1O00337 AL158070.2-201ENST00000623713 1621 ntBASIC14.62□□□□□ -0.07
SLC28A1O00337 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.62□□□□□ -0.07
SLC28A1O00337 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SLC28A1O00337 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
SLC28A1O00337 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SLC28A1O00337 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SLC28A1O00337 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.61□□□□□ -0.07
SLC28A1O00337 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
SLC28A1O00337 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.61□□□□□ -0.07
SLC28A1O00337 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.61□□□□□ -0.07
SLC28A1O00337 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.61□□□□□ -0.07
SLC28A1O00337 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
SLC28A1O00337 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.61□□□□□ -0.07
SLC28A1O00337 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.61□□□□□ -0.07
SLC28A1O00337 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.61□□□□□ -0.07
SLC28A1O00337 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.61□□□□□ -0.07
SLC28A1O00337 HLA-K-203ENST00000430151 1046 ntBASIC14.61□□□□□ -0.07
SLC28A1O00337 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.61□□□□□ -0.07
SLC28A1O00337 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.61□□□□□ -0.07
SLC28A1O00337 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.61□□□□□ -0.07
SLC28A1O00337 AL589987.1-201ENST00000453380 819 ntBASIC14.61□□□□□ -0.07
SLC28A1O00337 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.61□□□□□ -0.07
SLC28A1O00337 TPT1P11-201ENST00000458482 498 ntBASIC14.61□□□□□ -0.07
SLC28A1O00337 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.61□□□□□ -0.07
SLC28A1O00337 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.61□□□□□ -0.07
SLC28A1O00337 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC14.61□□□□□ -0.07
SLC28A1O00337 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.61□□□□□ -0.07
SLC28A1O00337 DUX4L27-201ENST00000554796 1261 ntBASIC14.61□□□□□ -0.07
SLC28A1O00337 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.61□□□□□ -0.07
SLC28A1O00337 AC107373.2-201ENST00000607735 490 ntBASIC14.61□□□□□ -0.07
SLC28A1O00337 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.61□□□□□ -0.07
SLC28A1O00337 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.61□□□□□ -0.07
SLC28A1O00337 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.61□□□□□ -0.07
SLC28A1O00337 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
SLC28A1O00337 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
SLC28A1O00337 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.61□□□□□ -0.07
SLC28A1O00337 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
SLC28A1O00337 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.61□□□□□ -0.07
SLC28A1O00337 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
SLC28A1O00337 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
SLC28A1O00337 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SLC28A1O00337 AL137783.1-201ENST00000623494 1896 ntBASIC14.61□□□□□ -0.07
SLC28A1O00337 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.61□□□□□ -0.07
SLC28A1O00337 AC015656.1-201ENST00000624209 3578 ntBASIC14.6□□□□□ -0.07
SLC28A1O00337 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SLC28A1O00337 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
SLC28A1O00337 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SLC28A1O00337 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SLC28A1O00337 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
SLC28A1O00337 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
SLC28A1O00337 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms