Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 AC010141.1-201ENST00000411585 623 ntBASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 CYP46A4P-201ENST00000414953 267 ntBASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 AC104073.2-201ENST00000453737 312 ntBASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 TSACC-208ENST00000481479 741 ntTSL 2 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 CDC23-208ENST00000505120 455 ntTSL 3 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 EID1-202ENST00000560490 584 ntTSL 3 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 NDUFV2P1-201ENST00000596415 907 ntBASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 DIO1-215ENST00000610607 796 ntTSL 5 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 PCBP2-OT1-201ENST00000634357 590 ntBASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PAAF1Q9BRP4 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC16.02■□□□□ 0.15
PAAF1Q9BRP4 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PAAF1Q9BRP4 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
PAAF1Q9BRP4 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PAAF1Q9BRP4 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PAAF1Q9BRP4 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.02■□□□□ 0.15
PAAF1Q9BRP4 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PAAF1Q9BRP4 AC004899.1-201ENST00000424687 1714 ntBASIC16.02■□□□□ 0.15
PAAF1Q9BRP4 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PAAF1Q9BRP4 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PAAF1Q9BRP4 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PAAF1Q9BRP4 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
PAAF1Q9BRP4 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.02■□□□□ 0.15
PAAF1Q9BRP4 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.02■□□□□ 0.15
PAAF1Q9BRP4 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PAAF1Q9BRP4 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 WASH3P-207ENST00000560956 1394 ntBASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 AL109954.1-202ENST00000564051 2148 ntBASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 KLF2P1-201ENST00000447438 1042 ntBASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 SPTLC1P5-201ENST00000450718 252 ntBASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 DUX4L46-201ENST00000566845 751 ntBASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 AC138649.2-201ENST00000615886 705 ntBASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 PPA1-206ENST00000625364 644 ntTSL 5 BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PAAF1Q9BRP4 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PAAF1Q9BRP4 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16■□□□□ 0.15
PAAF1Q9BRP4 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC16■□□□□ 0.15
PAAF1Q9BRP4 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC16■□□□□ 0.15
PAAF1Q9BRP4 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16■□□□□ 0.15
PAAF1Q9BRP4 SALL4P5-201ENST00000419001 1760 ntBASIC16■□□□□ 0.15
PAAF1Q9BRP4 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PAAF1Q9BRP4 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
PAAF1Q9BRP4 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms