Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 RAD18-204ENST00000418463 563 ntTSL 4 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 RAD18-205ENST00000421052 582 ntTSL 3 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 SLBP-205ENST00000488267 987 ntTSL 2 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 AC027369.6-201ENST00000525520 931 ntBASIC11.42□□□□□ -0.58
LINC00477Q96M19 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 SPDYE12P-201ENST00000618416 771 ntBASIC11.42□□□□□ -0.58
LINC00477Q96M19 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 AC079781.4-201ENST00000641908 219 ntBASIC11.42□□□□□ -0.58
LINC00477Q96M19 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 AC113367.3-201ENST00000508316 1912 ntBASIC11.42□□□□□ -0.58
LINC00477Q96M19 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 DMBT1P1-203ENST00000636837 4628 ntBASIC11.42□□□□□ -0.58
LINC00477Q96M19 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 AC067863.1-201ENST00000494933 530 ntBASIC11.41□□□□□ -0.58
LINC00477Q96M19 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 AC140878.1-201ENST00000565277 250 ntBASIC11.41□□□□□ -0.58
LINC00477Q96M19 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 5S_rRNA.22-201ENST00000614916 106 ntBASIC11.41□□□□□ -0.58
LINC00477Q96M19 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC11.41□□□□□ -0.58
LINC00477Q96M19 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00477Q96M19 RERG-209ENST00000546331 1383 ntTSL 2 BASIC11.41□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms