Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 MAGEA5-201ENST00000446757 942 ntBASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 REEP1-202ENST00000453231 940 ntTSL 2 BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 KRT18P25-201ENST00000508931 1278 ntBASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 AC022616.1-201ENST00000518688 554 ntBASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 USP35-204ENST00000530267 2419 ntTSL 2 BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 AC023824.1-201ENST00000562945 2975 ntBASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 AC020910.5-201ENST00000623668 1865 ntBASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 AC103702.1-201ENST00000548801 2630 ntBASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
NKX2-3Q8TAU0 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.83■□□□□ 0.45
NKX2-3Q8TAU0 LRRC59-203ENST00000576448 1531 ntBASIC17.83■□□□□ 0.45
NKX2-3Q8TAU0 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC17.83■□□□□ 0.45
NKX2-3Q8TAU0 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
NKX2-3Q8TAU0 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
NKX2-3Q8TAU0 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 AC006001.1-201ENST00000325130 474 ntBASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 AC005695.3-201ENST00000614522 232 ntBASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 AC138627.1-207ENST00000641560 1006 ntBASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-3Q8TAU0 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 RN7SKP230-201ENST00000365642 335 ntBASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 APOA2-204ENST00000464492 530 ntTSL 3 BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC17.82■□□□□ 0.44
NKX2-3Q8TAU0 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms