Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 FTLP1-201ENST00000449155 526 ntBASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 AC125604.1-201ENST00000496255 707 ntBASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 MIR6727-201ENST00000620702 65 ntBASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 REXO1L4P-201ENST00000605109 1937 ntBASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
NPAS3Q8IXF0 AC105250.1-201ENST00000509378 2057 ntBASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 PUDPP3-201ENST00000445368 636 ntBASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 EEF1DP6-201ENST00000449232 372 ntBASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 RPL18P13-201ENST00000478088 569 ntBASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 PRKXP1-201ENST00000561423 1122 ntBASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 DUX4L46-201ENST00000566845 751 ntBASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 AL136295.7-201ENST00000619226 1200 ntBASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 PRAL-201ENST00000624952 3286 ntBASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 AC020910.5-201ENST00000623668 1865 ntBASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.59■□□□□ 0.09
NPAS3Q8IXF0 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
NPAS3Q8IXF0 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
NPAS3Q8IXF0 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.58■□□□□ 0.09
NPAS3Q8IXF0 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
NPAS3Q8IXF0 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.58■□□□□ 0.09
NPAS3Q8IXF0 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.58■□□□□ 0.09
NPAS3Q8IXF0 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
NPAS3Q8IXF0 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NPAS3Q8IXF0 AL157791.1-201ENST00000553667 1699 ntBASIC15.58■□□□□ 0.08
NPAS3Q8IXF0 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NPAS3Q8IXF0 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
NPAS3Q8IXF0 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.58■□□□□ 0.08
NPAS3Q8IXF0 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NPAS3Q8IXF0 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC15.58■□□□□ 0.08
NPAS3Q8IXF0 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NPAS3Q8IXF0 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC15.58■□□□□ 0.08
NPAS3Q8IXF0 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.58■□□□□ 0.08
NPAS3Q8IXF0 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC15.58■□□□□ 0.08
NPAS3Q8IXF0 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NPAS3Q8IXF0 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC15.58■□□□□ 0.08
NPAS3Q8IXF0 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC15.58■□□□□ 0.08
NPAS3Q8IXF0 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC15.58■□□□□ 0.08
NPAS3Q8IXF0 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC15.58■□□□□ 0.08
NPAS3Q8IXF0 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC15.58■□□□□ 0.08
NPAS3Q8IXF0 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC15.58■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms