Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 MBP-201ENST00000354542 575 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 AC092638.2-201ENST00000441105 947 ntBASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 BUD31-205ENST00000456893 512 ntTSL 5 BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 ALG3P1-201ENST00000508806 1114 ntBASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 NHP2-202ENST00000314397 599 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 TLE1P1-201ENST00000422965 589 ntBASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 LINC00634-202ENST00000505157 222 ntBASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 NUDT4P2-201ENST00000578341 546 ntBASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 REXO1L2P-201ENST00000425429 2069 ntBASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 AC008894.3-201ENST00000624324 3103 ntBASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 AC023090.2-201ENST00000625182 2110 ntBASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 ACTBP7-201ENST00000418351 1124 ntBASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 MIR4472-1-201ENST00000584349 80 ntBASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 HKR1-225ENST00000592168 566 ntTSL 4 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 AC244250.3-201ENST00000620749 366 ntBASIC18.12■□□□□ 0.49
CCDC88AQ3V6T2 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 LCK-206ENST00000373564 2137 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 EIF5AP2-201ENST00000585668 1047 ntBASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms