Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SCN1BQ07699 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC13.61□□□□□ -0.23
SCN1BQ07699 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC13.61□□□□□ -0.23
SCN1BQ07699 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SCN1BQ07699 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC13.61□□□□□ -0.23
SCN1BQ07699 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SCN1BQ07699 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SCN1BQ07699 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
SCN1BQ07699 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC13.61□□□□□ -0.23
SCN1BQ07699 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
SCN1BQ07699 HNRNPA1P28-201ENST00000424481 961 ntBASIC13.61□□□□□ -0.23
SCN1BQ07699 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
SCN1BQ07699 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC13.61□□□□□ -0.23
SCN1BQ07699 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC13.61□□□□□ -0.23
SCN1BQ07699 AL135744.1-201ENST00000565098 629 ntBASIC13.61□□□□□ -0.23
SCN1BQ07699 MIR4313-201ENST00000580760 101 ntBASIC13.61□□□□□ -0.23
SCN1BQ07699 AC027307.2-201ENST00000591252 911 ntBASIC13.61□□□□□ -0.23
SCN1BQ07699 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SCN1BQ07699 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SCN1BQ07699 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC13.61□□□□□ -0.23
SCN1BQ07699 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC13.61□□□□□ -0.23
SCN1BQ07699 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
SCN1BQ07699 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
SCN1BQ07699 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
SCN1BQ07699 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SCN1BQ07699 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
SCN1BQ07699 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
SCN1BQ07699 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
SCN1BQ07699 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
SCN1BQ07699 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC13.61□□□□□ -0.23
SCN1BQ07699 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
SCN1BQ07699 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
SCN1BQ07699 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SCN1BQ07699 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SCN1BQ07699 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
SCN1BQ07699 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
SCN1BQ07699 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
SCN1BQ07699 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC13.6□□□□□ -0.23
SCN1BQ07699 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
SCN1BQ07699 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC13.6□□□□□ -0.23
SCN1BQ07699 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC13.6□□□□□ -0.23
SCN1BQ07699 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
SCN1BQ07699 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC13.6□□□□□ -0.23
SCN1BQ07699 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC13.6□□□□□ -0.23
SCN1BQ07699 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
SCN1BQ07699 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC13.6□□□□□ -0.23
SCN1BQ07699 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC13.6□□□□□ -0.23
SCN1BQ07699 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC13.6□□□□□ -0.23
SCN1BQ07699 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC13.6□□□□□ -0.23
SCN1BQ07699 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
SCN1BQ07699 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
SCN1BQ07699 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC13.6□□□□□ -0.23
SCN1BQ07699 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC13.6□□□□□ -0.23
SCN1BQ07699 AC098859.1-201ENST00000502915 1238 ntBASIC13.6□□□□□ -0.23
SCN1BQ07699 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC13.6□□□□□ -0.23
SCN1BQ07699 POLD2P1-201ENST00000511220 997 ntBASIC13.6□□□□□ -0.23
SCN1BQ07699 RNA5SP410-201ENST00000516285 106 ntBASIC13.6□□□□□ -0.23
SCN1BQ07699 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
SCN1BQ07699 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC13.6□□□□□ -0.23
SCN1BQ07699 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC13.6□□□□□ -0.23
SCN1BQ07699 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC13.6□□□□□ -0.23
SCN1BQ07699 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 AC024267.1-201ENST00000582320 895 ntBASIC13.6□□□□□ -0.23
SCN1BQ07699 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC13.6□□□□□ -0.23
SCN1BQ07699 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.6□□□□□ -0.23
SCN1BQ07699 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC13.6□□□□□ -0.23
SCN1BQ07699 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
SCN1BQ07699 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC13.6□□□□□ -0.23
SCN1BQ07699 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.6□□□□□ -0.23
SCN1BQ07699 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
SCN1BQ07699 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC13.6□□□□□ -0.23
SCN1BQ07699 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
SCN1BQ07699 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC13.6□□□□□ -0.23
SCN1BQ07699 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SCN1BQ07699 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
SCN1BQ07699 FUK-202ENST00000378912 3925 ntTSL 2 BASIC13.59□□□□□ -0.23
SCN1BQ07699 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC13.59□□□□□ -0.23
SCN1BQ07699 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC13.59□□□□□ -0.23
SCN1BQ07699 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
SCN1BQ07699 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC13.59□□□□□ -0.23
SCN1BQ07699 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms