Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC12.3□□□□□ -0.44
CX3CL1P78423 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
CX3CL1P78423 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
CX3CL1P78423 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC12.3□□□□□ -0.44
CX3CL1P78423 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC12.3□□□□□ -0.44
CX3CL1P78423 AC005840.4-201ENST00000541242 2494 ntBASIC12.3□□□□□ -0.44
CX3CL1P78423 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 AL137784.3-201ENST00000623858 2288 ntBASIC12.3□□□□□ -0.44
CX3CL1P78423 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
CX3CL1P78423 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC12.3□□□□□ -0.44
CX3CL1P78423 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
CX3CL1P78423 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC12.29□□□□□ -0.44
CX3CL1P78423 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 CELP-203ENST00000624767 2414 ntTSL 5 BASIC12.29□□□□□ -0.44
CX3CL1P78423 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
CX3CL1P78423 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC12.29□□□□□ -0.44
CX3CL1P78423 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 WDR53-203ENST00000429115 683 ntTSL 2 BASIC12.29□□□□□ -0.44
CX3CL1P78423 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC12.29□□□□□ -0.44
CX3CL1P78423 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
CX3CL1P78423 FAM86LP-201ENST00000478302 853 ntBASIC12.29□□□□□ -0.44
CX3CL1P78423 AC055876.2-201ENST00000531834 546 ntBASIC12.29□□□□□ -0.44
CX3CL1P78423 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC12.29□□□□□ -0.44
CX3CL1P78423 RRP7BP-205ENST00000566851 833 ntBASIC12.29□□□□□ -0.44
CX3CL1P78423 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC12.29□□□□□ -0.44
CX3CL1P78423 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC12.29□□□□□ -0.44
CX3CL1P78423 MIR4745-201ENST00000577608 62 ntBASIC12.29□□□□□ -0.44
CX3CL1P78423 RN7SL204P-201ENST00000582831 262 ntBASIC12.29□□□□□ -0.44
CX3CL1P78423 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC12.29□□□□□ -0.44
CX3CL1P78423 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC12.29□□□□□ -0.44
CX3CL1P78423 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
CX3CL1P78423 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
CX3CL1P78423 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC12.29□□□□□ -0.44
CX3CL1P78423 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
CX3CL1P78423 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
CX3CL1P78423 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
CX3CL1P78423 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
CX3CL1P78423 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 AMT-204ENST00000427987 1646 ntTSL 5 BASIC12.29□□□□□ -0.44
CX3CL1P78423 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC12.29□□□□□ -0.44
CX3CL1P78423 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
CX3CL1P78423 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC12.28□□□□□ -0.44
CX3CL1P78423 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
CX3CL1P78423 AC007541.1-201ENST00000570282 1469 ntBASIC12.28□□□□□ -0.44
CX3CL1P78423 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC12.28□□□□□ -0.44
CX3CL1P78423 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC12.28□□□□□ -0.44
CX3CL1P78423 AC091951.1-201ENST00000512854 2465 ntBASIC12.28□□□□□ -0.44
CX3CL1P78423 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC12.28□□□□□ -0.44
CX3CL1P78423 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 MROH4P-201ENST00000431302 1578 ntBASIC12.28□□□□□ -0.44
CX3CL1P78423 AC007686.3-201ENST00000619017 3487 ntBASIC12.28□□□□□ -0.44
CX3CL1P78423 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
CX3CL1P78423 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 DFFBP1-201ENST00000433250 979 ntBASIC12.28□□□□□ -0.44
CX3CL1P78423 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC12.28□□□□□ -0.44
CX3CL1P78423 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC12.28□□□□□ -0.44
CX3CL1P78423 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC12.28□□□□□ -0.44
CX3CL1P78423 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC12.28□□□□□ -0.44
CX3CL1P78423 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CX3CL1P78423 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC12.28□□□□□ -0.44
CX3CL1P78423 GPR39-203ENST00000622084 900 ntTSL 5 BASIC12.28□□□□□ -0.44
CX3CL1P78423 AC008761.3-201ENST00000624803 892 ntBASIC12.28□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms