Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
RFX3P48380 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
RFX3P48380 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.35□□□□□ -0.11
RFX3P48380 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.35□□□□□ -0.11
RFX3P48380 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.35□□□□□ -0.11
RFX3P48380 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
RFX3P48380 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
RFX3P48380 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
RFX3P48380 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.34□□□□□ -0.11
RFX3P48380 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX3P48380 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFX3P48380 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFX3P48380 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
RFX3P48380 AC007292.2-201ENST00000593524 1812 ntBASIC14.34□□□□□ -0.11
RFX3P48380 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.34□□□□□ -0.11
RFX3P48380 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX3P48380 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX3P48380 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
RFX3P48380 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX3P48380 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFX3P48380 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX3P48380 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.34□□□□□ -0.11
RFX3P48380 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.34□□□□□ -0.11
RFX3P48380 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.34□□□□□ -0.11
RFX3P48380 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.34□□□□□ -0.11
RFX3P48380 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFX3P48380 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.34□□□□□ -0.11
RFX3P48380 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.34□□□□□ -0.11
RFX3P48380 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.34□□□□□ -0.11
RFX3P48380 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX3P48380 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX3P48380 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.34□□□□□ -0.11
RFX3P48380 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
RFX3P48380 SPCS2P1-201ENST00000561636 679 ntBASIC14.34□□□□□ -0.11
RFX3P48380 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.34□□□□□ -0.11
RFX3P48380 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.34□□□□□ -0.11
RFX3P48380 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.34□□□□□ -0.11
RFX3P48380 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.34□□□□□ -0.11
RFX3P48380 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.34□□□□□ -0.11
RFX3P48380 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
RFX3P48380 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFX3P48380 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX3P48380 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.34□□□□□ -0.11
RFX3P48380 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
RFX3P48380 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX3P48380 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFX3P48380 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
RFX3P48380 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
RFX3P48380 CICP24-201ENST00000605464 2705 ntBASIC14.34□□□□□ -0.11
RFX3P48380 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFX3P48380 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX3P48380 CNTNAP3P2-201ENST00000617175 3861 ntBASIC14.34□□□□□ -0.11
RFX3P48380 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC14.33□□□□□ -0.11
RFX3P48380 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
RFX3P48380 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
RFX3P48380 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
RFX3P48380 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
RFX3P48380 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
RFX3P48380 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
RFX3P48380 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
RFX3P48380 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC14.33□□□□□ -0.12
RFX3P48380 INTS4P1-203ENST00000641008 3683 ntBASIC14.33□□□□□ -0.12
RFX3P48380 AC007541.1-201ENST00000570282 1469 ntBASIC14.33□□□□□ -0.12
RFX3P48380 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX3P48380 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX3P48380 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX3P48380 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.33□□□□□ -0.12
RFX3P48380 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX3P48380 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX3P48380 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RFX3P48380 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RFX3P48380 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX3P48380 AC236430.1-201ENST00000402231 743 ntBASIC14.33□□□□□ -0.12
RFX3P48380 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RFX3P48380 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
RFX3P48380 FAM86LP-201ENST00000478302 853 ntBASIC14.33□□□□□ -0.12
RFX3P48380 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX3P48380 MIR4745-201ENST00000577608 62 ntBASIC14.33□□□□□ -0.12
RFX3P48380 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
RFX3P48380 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.33□□□□□ -0.12
RFX3P48380 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.33□□□□□ -0.12
RFX3P48380 AL132655.2-201ENST00000596276 594 ntBASIC14.33□□□□□ -0.12
RFX3P48380 LINC02560-201ENST00000596379 459 ntBASIC14.33□□□□□ -0.12
RFX3P48380 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
RFX3P48380 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX3P48380 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.33□□□□□ -0.12
RFX3P48380 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX3P48380 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX3P48380 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX3P48380 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RFX3P48380 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RFX3P48380 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms