Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC19.35■□□□□ 0.69
COL18A1P39060 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC19.35■□□□□ 0.69
COL18A1P39060 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC19.35■□□□□ 0.69
COL18A1P39060 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC19.34■□□□□ 0.69
COL18A1P39060 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
COL18A1P39060 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC19.34■□□□□ 0.69
COL18A1P39060 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC19.34■□□□□ 0.69
COL18A1P39060 AC138466.4-201ENST00000623965 852 ntBASIC19.34■□□□□ 0.69
COL18A1P39060 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL18A1P39060 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL18A1P39060 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL18A1P39060 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL18A1P39060 GSN-206ENST00000394353 2311 ntTSL 2 BASIC19.34■□□□□ 0.69
COL18A1P39060 AC006504.5-208ENST00000588784 2401 ntBASIC19.34■□□□□ 0.69
COL18A1P39060 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC19.34■□□□□ 0.69
COL18A1P39060 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.34■□□□□ 0.69
COL18A1P39060 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL18A1P39060 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC19.34■□□□□ 0.69
COL18A1P39060 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL18A1P39060 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
COL18A1P39060 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC19.34■□□□□ 0.69
COL18A1P39060 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC19.34■□□□□ 0.69
COL18A1P39060 RN7SL530P-201ENST00000485097 298 ntBASIC19.34■□□□□ 0.69
COL18A1P39060 AC093909.3-201ENST00000504783 336 ntBASIC19.34■□□□□ 0.69
COL18A1P39060 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC19.34■□□□□ 0.69
COL18A1P39060 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC19.34■□□□□ 0.69
COL18A1P39060 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC19.34■□□□□ 0.69
COL18A1P39060 AC073592.2-201ENST00000623062 780 ntBASIC19.34■□□□□ 0.69
COL18A1P39060 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
COL18A1P39060 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL18A1P39060 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL18A1P39060 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL18A1P39060 CICP23-201ENST00000605013 2741 ntBASIC19.34■□□□□ 0.69
COL18A1P39060 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
COL18A1P39060 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
COL18A1P39060 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
COL18A1P39060 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL18A1P39060 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL18A1P39060 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL18A1P39060 LTB4R2-202ENST00000528054 3092 ntBASIC19.33■□□□□ 0.69
COL18A1P39060 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL18A1P39060 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL18A1P39060 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL18A1P39060 AC079328.2-201ENST00000561241 3354 ntBASIC19.33■□□□□ 0.69
COL18A1P39060 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL18A1P39060 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC19.33■□□□□ 0.69
COL18A1P39060 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL18A1P39060 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL18A1P39060 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL18A1P39060 NHP2-202ENST00000314397 599 ntTSL 2 BASIC19.33■□□□□ 0.68
COL18A1P39060 PYY2-201ENST00000315776 282 ntBASIC19.33■□□□□ 0.68
COL18A1P39060 PGAM1P12-201ENST00000505622 748 ntBASIC19.33■□□□□ 0.68
COL18A1P39060 RPS23-204ENST00000507980 836 ntTSL 2 BASIC19.33■□□□□ 0.68
COL18A1P39060 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC19.33■□□□□ 0.68
COL18A1P39060 DNM1P51-201ENST00000558149 522 ntBASIC19.33■□□□□ 0.68
COL18A1P39060 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
COL18A1P39060 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL18A1P39060 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL18A1P39060 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL18A1P39060 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC19.33■□□□□ 0.68
COL18A1P39060 AC025183.3-201ENST00000623526 1482 ntBASIC19.33■□□□□ 0.68
COL18A1P39060 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL18A1P39060 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
COL18A1P39060 LINC00528-201ENST00000600723 2160 ntBASIC19.33■□□□□ 0.68
COL18A1P39060 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.33■□□□□ 0.68
COL18A1P39060 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
COL18A1P39060 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL18A1P39060 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
COL18A1P39060 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC19.33■□□□□ 0.68
COL18A1P39060 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL18A1P39060 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL18A1P39060 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL18A1P39060 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL18A1P39060 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL18A1P39060 AC108734.2-201ENST00000420887 1069 ntBASIC19.32■□□□□ 0.68
COL18A1P39060 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC19.32■□□□□ 0.68
COL18A1P39060 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC19.32■□□□□ 0.68
COL18A1P39060 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC19.32■□□□□ 0.68
COL18A1P39060 AC095040.1-201ENST00000513286 675 ntBASIC19.32■□□□□ 0.68
COL18A1P39060 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL18A1P39060 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC19.32■□□□□ 0.68
COL18A1P39060 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC19.32■□□□□ 0.68
COL18A1P39060 AC012073.1-201ENST00000606114 1108 ntBASIC19.32■□□□□ 0.68
COL18A1P39060 PCDHA1-201ENST00000378133 2726 ntBASIC19.32■□□□□ 0.68
COL18A1P39060 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL18A1P39060 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL18A1P39060 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC19.32■□□□□ 0.68
COL18A1P39060 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
COL18A1P39060 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL18A1P39060 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms