Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC9P31274 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC9P31274 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC9P31274 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC9P31274 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
HOXC9P31274 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC19.79■□□□□ 0.76
HOXC9P31274 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC9P31274 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC9P31274 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC19.79■□□□□ 0.76
HOXC9P31274 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC9P31274 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
HOXC9P31274 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC19.78■□□□□ 0.76
HOXC9P31274 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
HOXC9P31274 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC9P31274 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC9P31274 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC9P31274 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC9P31274 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC9P31274 OR2K2-202ENST00000374428 1038 ntBASIC19.78■□□□□ 0.76
HOXC9P31274 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC9P31274 FGFR3P1-201ENST00000449999 601 ntBASIC19.78■□□□□ 0.76
HOXC9P31274 LY6E-208ENST00000520531 490 ntTSL 2 BASIC19.78■□□□□ 0.76
HOXC9P31274 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC19.78■□□□□ 0.76
HOXC9P31274 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC19.78■□□□□ 0.76
HOXC9P31274 DDX5-235ENST00000630471 473 ntTSL 4 BASIC19.78■□□□□ 0.76
HOXC9P31274 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC9P31274 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
HOXC9P31274 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC9P31274 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
HOXC9P31274 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC9P31274 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC9P31274 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
HOXC9P31274 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.77■□□□□ 0.76
HOXC9P31274 PCDHGB8P-201ENST00000502926 1973 ntBASIC19.77■□□□□ 0.76
HOXC9P31274 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC9P31274 TBC1D3J-201ENST00000620719 1426 ntBASIC19.77■□□□□ 0.76
HOXC9P31274 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC19.77■□□□□ 0.76
HOXC9P31274 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.77■□□□□ 0.76
HOXC9P31274 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.77■□□□□ 0.76
HOXC9P31274 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC9P31274 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC9P31274 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC9P31274 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC9P31274 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC9P31274 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC9P31274 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
HOXC9P31274 IGF1-203ENST00000392904 761 ntTSL 5 BASIC19.77■□□□□ 0.76
HOXC9P31274 LBH-202ENST00000401506 485 ntTSL 3 BASIC19.77■□□□□ 0.76
HOXC9P31274 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC19.77■□□□□ 0.76
HOXC9P31274 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC9P31274 AC253536.4-201ENST00000440539 267 ntBASIC19.77■□□□□ 0.76
HOXC9P31274 AL035414.1-201ENST00000451327 857 ntBASIC19.77■□□□□ 0.76
HOXC9P31274 LDHBP1-201ENST00000455730 1119 ntBASIC19.77■□□□□ 0.76
HOXC9P31274 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC19.77■□□□□ 0.76
HOXC9P31274 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC9P31274 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC9P31274 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC19.77■□□□□ 0.76
HOXC9P31274 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC19.77■□□□□ 0.76
HOXC9P31274 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC19.77■□□□□ 0.76
HOXC9P31274 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
HOXC9P31274 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC9P31274 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC19.77■□□□□ 0.76
HOXC9P31274 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC19.77■□□□□ 0.76
HOXC9P31274 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC19.77■□□□□ 0.76
HOXC9P31274 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC9P31274 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
HOXC9P31274 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC19.77■□□□□ 0.76
HOXC9P31274 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
HOXC9P31274 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC19.77■□□□□ 0.75
HOXC9P31274 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
HOXC9P31274 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC19.76■□□□□ 0.75
HOXC9P31274 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 AC026316.1-201ENST00000398900 414 ntBASIC19.76■□□□□ 0.75
HOXC9P31274 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
HOXC9P31274 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
HOXC9P31274 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC19.76■□□□□ 0.75
HOXC9P31274 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC19.76■□□□□ 0.75
HOXC9P31274 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC19.76■□□□□ 0.75
HOXC9P31274 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC19.76■□□□□ 0.75
HOXC9P31274 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC19.76■□□□□ 0.75
HOXC9P31274 POU5F1P2-201ENST00000521750 823 ntBASIC19.76■□□□□ 0.75
HOXC9P31274 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC19.76■□□□□ 0.75
HOXC9P31274 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC19.76■□□□□ 0.75
HOXC9P31274 RN7SL555P-201ENST00000584742 339 ntBASIC19.76■□□□□ 0.75
HOXC9P31274 AC073352.2-201ENST00000609385 439 ntBASIC19.76■□□□□ 0.75
HOXC9P31274 AC103691.2-201ENST00000618824 433 ntBASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms