Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A3P25940 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A3P25940 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A3P25940 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A3P25940 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A3P25940 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A3P25940 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
COL5A3P25940 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A3P25940 AC026471.1-201ENST00000564629 3026 ntBASIC18.48■□□□□ 0.55
COL5A3P25940 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC18.48■□□□□ 0.55
COL5A3P25940 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
COL5A3P25940 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A3P25940 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A3P25940 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A3P25940 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC18.48■□□□□ 0.55
COL5A3P25940 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A3P25940 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC18.48■□□□□ 0.55
COL5A3P25940 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A3P25940 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.48■□□□□ 0.55
COL5A3P25940 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A3P25940 AC136621.1-201ENST00000624017 2304 ntBASIC18.48■□□□□ 0.55
COL5A3P25940 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC18.48■□□□□ 0.55
COL5A3P25940 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC18.48■□□□□ 0.55
COL5A3P25940 SCARNA12-201ENST00000459155 270 ntBASIC18.48■□□□□ 0.55
COL5A3P25940 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC18.48■□□□□ 0.55
COL5A3P25940 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC18.48■□□□□ 0.55
COL5A3P25940 MIR4472-1-201ENST00000584349 80 ntBASIC18.48■□□□□ 0.55
COL5A3P25940 SIGLEC22P-201ENST00000599104 714 ntBASIC18.48■□□□□ 0.55
COL5A3P25940 AC006158.1-201ENST00000610661 249 ntBASIC18.48■□□□□ 0.55
COL5A3P25940 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A3P25940 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A3P25940 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A3P25940 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC18.48■□□□□ 0.55
COL5A3P25940 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A3P25940 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
COL5A3P25940 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A3P25940 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A3P25940 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A3P25940 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.47■□□□□ 0.55
COL5A3P25940 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A3P25940 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A3P25940 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A3P25940 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A3P25940 BRD7P5-201ENST00000299197 1822 ntBASIC18.47■□□□□ 0.55
COL5A3P25940 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A3P25940 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A3P25940 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A3P25940 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A3P25940 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A3P25940 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC18.47■□□□□ 0.55
COL5A3P25940 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A3P25940 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.47■□□□□ 0.55
COL5A3P25940 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC18.47■□□□□ 0.55
COL5A3P25940 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC18.47■□□□□ 0.55
COL5A3P25940 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC18.47■□□□□ 0.55
COL5A3P25940 AC073592.2-201ENST00000623062 780 ntBASIC18.47■□□□□ 0.55
COL5A3P25940 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
COL5A3P25940 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
COL5A3P25940 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A3P25940 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A3P25940 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A3P25940 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A3P25940 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A3P25940 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.46■□□□□ 0.55
COL5A3P25940 Z69890.1-201ENST00000382990 339 ntBASIC18.46■□□□□ 0.55
COL5A3P25940 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A3P25940 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC18.46■□□□□ 0.55
COL5A3P25940 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC18.46■□□□□ 0.55
COL5A3P25940 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC18.46■□□□□ 0.55
COL5A3P25940 AC140113.1-201ENST00000603467 169 ntBASIC18.46■□□□□ 0.55
COL5A3P25940 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A3P25940 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A3P25940 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A3P25940 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A3P25940 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A3P25940 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A3P25940 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A3P25940 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
COL5A3P25940 NHP2-202ENST00000314397 599 ntTSL 2 BASIC18.46■□□□□ 0.55
COL5A3P25940 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A3P25940 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC18.46■□□□□ 0.55
COL5A3P25940 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC18.46■□□□□ 0.55
COL5A3P25940 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC18.46■□□□□ 0.55
COL5A3P25940 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC18.46■□□□□ 0.55
COL5A3P25940 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC18.46■□□□□ 0.55
COL5A3P25940 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
COL5A3P25940 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A3P25940 AC011247.3-201ENST00000603297 438 ntBASIC18.46■□□□□ 0.55
COL5A3P25940 LINC00431-202ENST00000636375 159 ntBASIC18.46■□□□□ 0.55
COL5A3P25940 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.54
COL5A3P25940 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
COL5A3P25940 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.54
COL5A3P25940 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
COL5A3P25940 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
COL5A3P25940 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A3P25940 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
COL5A3P25940 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A3P25940 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A3P25940 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A3P25940 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms