Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
SDC1P18827 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 SPDYE19P-201ENST00000338590 713 ntBASIC14.45□□□□□ -0.1
SDC1P18827 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.45□□□□□ -0.1
SDC1P18827 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.45□□□□□ -0.1
SDC1P18827 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
SDC1P18827 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.45□□□□□ -0.1
SDC1P18827 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
SDC1P18827 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.45□□□□□ -0.1
SDC1P18827 BRI3BPP1-201ENST00000594224 787 ntBASIC14.45□□□□□ -0.1
SDC1P18827 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.45□□□□□ -0.1
SDC1P18827 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
SDC1P18827 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.45□□□□□ -0.1
SDC1P18827 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
SDC1P18827 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.45□□□□□ -0.1
SDC1P18827 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
SDC1P18827 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.45□□□□□ -0.1
SDC1P18827 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
SDC1P18827 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.45□□□□□ -0.1
SDC1P18827 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.45□□□□□ -0.1
SDC1P18827 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.45□□□□□ -0.1
SDC1P18827 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.45□□□□□ -0.1
SDC1P18827 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
SDC1P18827 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.45□□□□□ -0.1
SDC1P18827 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
SDC1P18827 LINC01230-201ENST00000625222 3017 ntBASIC14.44□□□□□ -0.1
SDC1P18827 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
SDC1P18827 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.44□□□□□ -0.1
SDC1P18827 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
SDC1P18827 AC015802.1-201ENST00000588104 1449 ntBASIC14.44□□□□□ -0.1
SDC1P18827 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.44□□□□□ -0.1
SDC1P18827 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.44□□□□□ -0.1
SDC1P18827 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.44□□□□□ -0.1
SDC1P18827 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
SDC1P18827 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
SDC1P18827 BASP1P1-201ENST00000430708 665 ntBASIC14.44□□□□□ -0.1
SDC1P18827 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 RPL13AP25-201ENST00000484130 612 ntBASIC14.44□□□□□ -0.1
SDC1P18827 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.44□□□□□ -0.1
SDC1P18827 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.44□□□□□ -0.1
SDC1P18827 AC093214.1-201ENST00000511688 1107 ntBASIC14.44□□□□□ -0.1
SDC1P18827 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.44□□□□□ -0.1
SDC1P18827 RRP7BP-205ENST00000566851 833 ntBASIC14.44□□□□□ -0.1
SDC1P18827 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC14.44□□□□□ -0.1
SDC1P18827 AC005498.2-205ENST00000593218 784 ntBASIC14.44□□□□□ -0.1
SDC1P18827 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC14.44□□□□□ -0.1
SDC1P18827 AC093813.1-201ENST00000605066 256 ntBASIC14.44□□□□□ -0.1
SDC1P18827 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.44□□□□□ -0.1
SDC1P18827 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.44□□□□□ -0.1
SDC1P18827 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.44□□□□□ -0.1
SDC1P18827 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
SDC1P18827 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.44□□□□□ -0.1
SDC1P18827 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
SDC1P18827 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SDC1P18827 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
SDC1P18827 AC027601.5-201ENST00000624065 2482 ntBASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms