Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
TPM1P09493 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.8■□□□□ 0.28
TPM1P09493 AC040169.1-201ENST00000565382 521 ntBASIC16.8■□□□□ 0.28
TPM1P09493 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
TPM1P09493 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.8■□□□□ 0.28
TPM1P09493 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.8■□□□□ 0.28
TPM1P09493 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.8■□□□□ 0.28
TPM1P09493 C20orf181-201ENST00000623918 480 ntBASIC16.8■□□□□ 0.28
TPM1P09493 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.8■□□□□ 0.28
TPM1P09493 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
TPM1P09493 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TPM1P09493 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TPM1P09493 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
TPM1P09493 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TPM1P09493 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
TPM1P09493 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TPM1P09493 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
TPM1P09493 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC16.8■□□□□ 0.28
TPM1P09493 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC16.8■□□□□ 0.28
TPM1P09493 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TPM1P09493 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TPM1P09493 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
TPM1P09493 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.8■□□□□ 0.28
TPM1P09493 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
TPM1P09493 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
TPM1P09493 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
TPM1P09493 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
TPM1P09493 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC16.8■□□□□ 0.28
TPM1P09493 AC092135.3-201ENST00000624151 1846 ntBASIC16.8■□□□□ 0.28
TPM1P09493 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC16.79■□□□□ 0.28
TPM1P09493 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
TPM1P09493 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 AL035456.1-201ENST00000456064 1369 ntBASIC16.79■□□□□ 0.28
TPM1P09493 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.79■□□□□ 0.28
TPM1P09493 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
TPM1P09493 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 SF1-209ENST00000433274 2317 ntTSL 2 BASIC16.79■□□□□ 0.28
TPM1P09493 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
TPM1P09493 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC16.79■□□□□ 0.28
TPM1P09493 MCCD1P2-201ENST00000423228 335 ntBASIC16.79■□□□□ 0.28
TPM1P09493 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.79■□□□□ 0.28
TPM1P09493 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.79■□□□□ 0.28
TPM1P09493 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.79■□□□□ 0.28
TPM1P09493 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.79■□□□□ 0.28
TPM1P09493 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.79■□□□□ 0.28
TPM1P09493 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.79■□□□□ 0.28
TPM1P09493 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC16.79■□□□□ 0.28
TPM1P09493 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC16.79■□□□□ 0.28
TPM1P09493 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.79■□□□□ 0.28
TPM1P09493 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
TPM1P09493 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC16.79■□□□□ 0.28
TPM1P09493 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC16.79■□□□□ 0.28
TPM1P09493 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 AC138969.3-201ENST00000546612 1459 ntBASIC16.79■□□□□ 0.28
TPM1P09493 AC138932.2-201ENST00000548268 1459 ntBASIC16.79■□□□□ 0.28
TPM1P09493 AC126755.4-201ENST00000549796 1459 ntBASIC16.79■□□□□ 0.28
TPM1P09493 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TPM1P09493 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
TPM1P09493 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.79■□□□□ 0.28
TPM1P09493 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC16.79■□□□□ 0.28
TPM1P09493 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
TPM1P09493 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
TPM1P09493 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TPM1P09493 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
TPM1P09493 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
TPM1P09493 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms