Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.65□□□□□ -0.06
HOXC4P09017 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.65□□□□□ -0.06
HOXC4P09017 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
HOXC4P09017 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HOXC4P09017 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
HOXC4P09017 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
HOXC4P09017 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
HOXC4P09017 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HOXC4P09017 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 NME6-203ENST00000415644 849 ntTSL 2 BASIC14.65□□□□□ -0.06
HOXC4P09017 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC14.65□□□□□ -0.06
HOXC4P09017 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC14.65□□□□□ -0.06
HOXC4P09017 AC012441.2-201ENST00000444843 739 ntBASIC14.65□□□□□ -0.06
HOXC4P09017 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC14.65□□□□□ -0.06
HOXC4P09017 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC14.65□□□□□ -0.06
HOXC4P09017 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 RN7SL163P-201ENST00000583100 276 ntBASIC14.65□□□□□ -0.06
HOXC4P09017 NAT9-222ENST00000583476 583 ntTSL 3 BASIC14.65□□□□□ -0.06
HOXC4P09017 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
HOXC4P09017 AC027601.3-201ENST00000622907 509 ntBASIC14.65□□□□□ -0.06
HOXC4P09017 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HOXC4P09017 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HOXC4P09017 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 LINC01101-201ENST00000622953 1884 ntBASIC14.65□□□□□ -0.06
HOXC4P09017 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.65□□□□□ -0.06
HOXC4P09017 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
HOXC4P09017 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
HOXC4P09017 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXC4P09017 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.64□□□□□ -0.07
HOXC4P09017 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.64□□□□□ -0.07
HOXC4P09017 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
HOXC4P09017 PAUPAR-201ENST00000630360 2965 ntBASIC14.64□□□□□ -0.07
HOXC4P09017 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.64□□□□□ -0.07
HOXC4P09017 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
HOXC4P09017 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
HOXC4P09017 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.64□□□□□ -0.07
HOXC4P09017 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC14.64□□□□□ -0.07
HOXC4P09017 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.64□□□□□ -0.07
HOXC4P09017 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
HOXC4P09017 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
HOXC4P09017 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC14.64□□□□□ -0.07
HOXC4P09017 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 SKA2-202ENST00000437036 625 ntTSL 2 BASIC14.64□□□□□ -0.07
HOXC4P09017 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC14.64□□□□□ -0.07
HOXC4P09017 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC14.64□□□□□ -0.07
HOXC4P09017 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC14.64□□□□□ -0.07
HOXC4P09017 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC14.64□□□□□ -0.07
HOXC4P09017 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC14.64□□□□□ -0.07
HOXC4P09017 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.64□□□□□ -0.07
HOXC4P09017 AC004923.1-202ENST00000642106 209 ntBASIC14.64□□□□□ -0.07
HOXC4P09017 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC14.64□□□□□ -0.07
HOXC4P09017 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 E2F3P2-201ENST00000447755 1422 ntBASIC14.64□□□□□ -0.07
HOXC4P09017 NFIC-211ENST00000641145 8399 ntBASIC14.64□□□□□ -0.07
HOXC4P09017 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms