Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 CSTP2-201ENST00000610599 398 ntBASIC25.19■■□□□ 1.62
CUX2O14529 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC25.19■■□□□ 1.62
CUX2O14529 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CUX2O14529 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CUX2O14529 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CUX2O14529 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
CUX2O14529 AL136172.1-201ENST00000598590 1394 ntBASIC25.18■■□□□ 1.62
CUX2O14529 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC25.18■■□□□ 1.62
CUX2O14529 REXO1L5P-201ENST00000622260 2098 ntBASIC25.18■■□□□ 1.62
CUX2O14529 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC25.18■■□□□ 1.62
CUX2O14529 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC25.18■■□□□ 1.62
CUX2O14529 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CUX2O14529 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CUX2O14529 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
CUX2O14529 RBPMSLP-201ENST00000433427 502 ntBASIC25.18■■□□□ 1.62
CUX2O14529 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC25.18■■□□□ 1.62
CUX2O14529 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC25.18■■□□□ 1.62
CUX2O14529 RGS5-216ENST00000449680 788 ntTSL 3 BASIC25.18■■□□□ 1.62
CUX2O14529 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CUX2O14529 RN7SL288P-201ENST00000490496 291 ntBASIC25.18■■□□□ 1.62
CUX2O14529 AC013553.1-201ENST00000560906 267 ntBASIC25.18■■□□□ 1.62
CUX2O14529 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CUX2O14529 AL160191.2-201ENST00000603975 601 ntBASIC25.18■■□□□ 1.62
CUX2O14529 ST5-261ENST00000626808 1071 ntTSL 5 BASIC25.18■■□□□ 1.62
CUX2O14529 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CUX2O14529 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CUX2O14529 FRMD6-AS1-201ENST00000617151 2229 ntBASIC25.18■■□□□ 1.62
CUX2O14529 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
CUX2O14529 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC25.18■■□□□ 1.62
CUX2O14529 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
CUX2O14529 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC25.17■■□□□ 1.62
CUX2O14529 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CUX2O14529 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC25.17■■□□□ 1.62
CUX2O14529 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
CUX2O14529 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CUX2O14529 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC25.17■■□□□ 1.62
CUX2O14529 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC25.17■■□□□ 1.62
CUX2O14529 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC25.17■■□□□ 1.62
CUX2O14529 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
CUX2O14529 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC25.17■■□□□ 1.62
CUX2O14529 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC25.17■■□□□ 1.62
CUX2O14529 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
CUX2O14529 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CUX2O14529 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
CUX2O14529 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CUX2O14529 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CUX2O14529 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CUX2O14529 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC25.17■■□□□ 1.62
CUX2O14529 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
CUX2O14529 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CUX2O14529 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CUX2O14529 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CUX2O14529 MST1L-201ENST00000442552 2185 ntBASIC25.16■■□□□ 1.62
CUX2O14529 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC25.16■■□□□ 1.62
CUX2O14529 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CUX2O14529 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC25.16■■□□□ 1.62
CUX2O14529 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC25.16■■□□□ 1.62
CUX2O14529 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC25.16■■□□□ 1.62
CUX2O14529 AC136604.1-202ENST00000425471 771 ntBASIC25.16■■□□□ 1.62
CUX2O14529 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC25.16■■□□□ 1.62
CUX2O14529 AC090136.2-201ENST00000517809 420 ntBASIC25.16■■□□□ 1.62
CUX2O14529 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC25.16■■□□□ 1.62
CUX2O14529 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC25.16■■□□□ 1.62
CUX2O14529 HNRNPA1P16-201ENST00000575692 955 ntBASIC25.16■■□□□ 1.62
CUX2O14529 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CUX2O14529 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC25.16■■□□□ 1.62
CUX2O14529 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC25.16■■□□□ 1.62
CUX2O14529 GCK-209ENST00000616242 2260 ntTSL 5 BASIC25.16■■□□□ 1.62
CUX2O14529 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CUX2O14529 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CUX2O14529 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CUX2O14529 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CUX2O14529 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC25.16■■□□□ 1.62
CUX2O14529 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC25.16■■□□□ 1.62
CUX2O14529 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
CUX2O14529 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
CUX2O14529 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
CUX2O14529 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CUX2O14529 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
CUX2O14529 PIFO-201ENST00000369737 746 ntTSL 2 BASIC25.15■■□□□ 1.62
CUX2O14529 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CUX2O14529 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC25.15■■□□□ 1.62
CUX2O14529 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC25.15■■□□□ 1.62
CUX2O14529 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC25.15■■□□□ 1.62
CUX2O14529 MIR4254-201ENST00000581063 76 ntBASIC25.15■■□□□ 1.62
CUX2O14529 AC079331.1-201ENST00000623200 1200 ntBASIC25.15■■□□□ 1.62
CUX2O14529 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC25.15■■□□□ 1.62
CUX2O14529 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
CUX2O14529 AC009090.5-201ENST00000624886 2285 ntBASIC25.15■■□□□ 1.62
CUX2O14529 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC25.15■■□□□ 1.62
CUX2O14529 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC25.15■■□□□ 1.62
CUX2O14529 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CUX2O14529 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CUX2O14529 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CUX2O14529 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CUX2O14529 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CUX2O14529 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CUX2O14529 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
CUX2O14529 AL157414.3-201ENST00000624276 1954 ntBASIC25.15■■□□□ 1.62
CUX2O14529 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms