Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 AC010327.5-201ENST00000586923 3061 ntBASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 AL360270.3-201ENST00000609118 1348 ntBASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 AL671883.3-201ENST00000603274 991 ntBASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 AL109936.8-201ENST00000641772 604 ntBASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 AL157414.3-201ENST00000624276 1954 ntBASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.25■□□□□ 0.03
TRIM49D1C9J1S8 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms