Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
AP4E1Q9UPM8 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.77■□□□□ 0.11
AP4E1Q9UPM8 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
AP4E1Q9UPM8 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.77■□□□□ 0.11
AP4E1Q9UPM8 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 AP006294.1-201ENST00000415407 339 ntBASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
AP4E1Q9UPM8 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 ACKR1-201ENST00000368121 1240 ntBASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 AC025048.6-201ENST00000634326 1161 ntBASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
AP4E1Q9UPM8 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms