Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
VPS29Q9UBQ0 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
VPS29Q9UBQ0 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS29Q9UBQ0 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
VPS29Q9UBQ0 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
VPS29Q9UBQ0 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS29Q9UBQ0 AC007191.1-201ENST00000623179 2995 ntBASIC14.59□□□□□ -0.07
VPS29Q9UBQ0 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS29Q9UBQ0 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS29Q9UBQ0 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
VPS29Q9UBQ0 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS29Q9UBQ0 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS29Q9UBQ0 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS29Q9UBQ0 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS29Q9UBQ0 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS29Q9UBQ0 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS29Q9UBQ0 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS29Q9UBQ0 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS29Q9UBQ0 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
VPS29Q9UBQ0 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.58□□□□□ -0.07
VPS29Q9UBQ0 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
VPS29Q9UBQ0 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
VPS29Q9UBQ0 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.07
VPS29Q9UBQ0 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.58□□□□□ -0.07
VPS29Q9UBQ0 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 HLA-K-203ENST00000430151 1046 ntBASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 CYMP-203ENST00000474680 1263 ntBASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 AC104596.2-201ENST00000512793 793 ntBASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 AC099568.2-201ENST00000609194 695 ntBASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 AL137783.1-201ENST00000623494 1896 ntBASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
VPS29Q9UBQ0 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 AC134915.1-201ENST00000426461 574 ntBASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 AC055876.2-201ENST00000531834 546 ntBASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS29Q9UBQ0 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms