Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 KRT8P35-201ENST00000483942 1338 ntBASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 AC023024.2-201ENST00000623561 1993 ntBASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 ACTBP8-201ENST00000403258 1108 ntBASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 AC112492.5-201ENST00000421897 457 ntBASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 BCRP2-202ENST00000447763 634 ntBASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 GPR53P-205ENST00000457298 1084 ntBASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 BCRP6-201ENST00000510112 632 ntBASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 BCRP7-201ENST00000511549 544 ntBASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 RAB43P1-201ENST00000561790 589 ntBASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 APRT-204ENST00000563655 709 ntTSL 5 BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 PFAS-212ENST00000625942 396 ntTSL 5 BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
TRIM39Q9HCM9 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 GK-202ENST00000378941 458 ntTSL 3 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 AC092933.1-201ENST00000393644 945 ntBASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms