Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDH9Q9HC56 AL391825.1-201ENST00000457671 1364 ntBASIC15.7■□□□□ 0.1
PCDH9Q9HC56 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PCDH9Q9HC56 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDH9Q9HC56 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDH9Q9HC56 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PCDH9Q9HC56 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PCDH9Q9HC56 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDH9Q9HC56 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDH9Q9HC56 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDH9Q9HC56 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
PCDH9Q9HC56 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
PCDH9Q9HC56 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDH9Q9HC56 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 PIN1P1-201ENST00000412108 996 ntBASIC15.69■□□□□ 0.1
PCDH9Q9HC56 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 AL353779.1-201ENST00000434793 351 ntBASIC15.69■□□□□ 0.1
PCDH9Q9HC56 FAM86LP-201ENST00000478302 853 ntBASIC15.69■□□□□ 0.1
PCDH9Q9HC56 AC004066.1-201ENST00000502488 802 ntBASIC15.69■□□□□ 0.1
PCDH9Q9HC56 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 FADS2-205ENST00000517839 469 ntTSL 3 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
PCDH9Q9HC56 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 AC097359.2-201ENST00000604992 2389 ntBASIC15.68■□□□□ 0.1
PCDH9Q9HC56 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 AC087499.6-201ENST00000411576 835 ntBASIC15.68■□□□□ 0.1
PCDH9Q9HC56 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 155.7 ms