Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 PSMD4P1-201ENST00000433951 1109 ntBASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 DPY19L2P5-201ENST00000456300 331 ntBASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 RNA5SP417-201ENST00000516459 108 ntBASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 AP001184.1-201ENST00000637936 376 ntBASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 PCDHA1-201ENST00000378133 2726 ntBASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC19.01■□□□□ 0.63
SHANK3Q9BYB0 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC19■□□□□ 0.63
SHANK3Q9BYB0 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 RGS5-216ENST00000449680 788 ntTSL 3 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 NAA40-205ENST00000539656 577 ntTSL 4 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 AC002044.2-201ENST00000624910 970 ntBASIC19■□□□□ 0.63
SHANK3Q9BYB0 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SHANK3Q9BYB0 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SHANK3Q9BYB0 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SHANK3Q9BYB0 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SHANK3Q9BYB0 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SHANK3Q9BYB0 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19■□□□□ 0.63
SHANK3Q9BYB0 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SHANK3Q9BYB0 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SHANK3Q9BYB0 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC19■□□□□ 0.63
SHANK3Q9BYB0 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 ERP29P1-201ENST00000442902 706 ntBASIC19■□□□□ 0.63
SHANK3Q9BYB0 REEP5-205ENST00000504247 480 ntTSL 5 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
SHANK3Q9BYB0 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 CELP-203ENST00000624767 2414 ntTSL 5 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19■□□□□ 0.63
SHANK3Q9BYB0 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SHANK3Q9BYB0 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC19■□□□□ 0.63
SHANK3Q9BYB0 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 ALG1L6P-201ENST00000515248 758 ntBASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 C2orf69P1-201ENST00000563532 1093 ntBASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 DRG2-220ENST00000583355 891 ntTSL 3 BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHANK3Q9BYB0 AL136172.1-201ENST00000598590 1394 ntBASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 CICP23-201ENST00000605013 2741 ntBASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 120.6 ms