Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ENPP7P14-201ENST00000621765 1040 ntBASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 AC087481.3-201ENST00000602886 1894 ntBASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 KRT8P44-201ENST00000441609 1350 ntBASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 TPM3P8-201ENST00000330554 643 ntBASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 Z93015.1-201ENST00000451718 390 ntBASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 AL590640.2-201ENST00000457038 527 ntBASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAIPQ9BWF2 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 LRRC59-203ENST00000576448 1531 ntBASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 MPV17-205ENST00000402310 906 ntTSL 5 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 MIR1202-201ENST00000408529 83 ntBASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 EIF3FP3-201ENST00000434851 1086 ntBASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 EMC4-209ENST00000559421 497 ntTSL 2 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms