Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 MIR770-201ENST00000390219 98 ntBASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 AC107890.1-201ENST00000422478 521 ntBASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 AL589987.1-201ENST00000453380 819 ntBASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 AC097493.3-201ENST00000509725 367 ntBASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 AC106028.4-201ENST00000614509 607 ntBASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 AC005089.1-201ENST00000619486 2241 ntBASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 CICP4-201ENST00000447359 2812 ntBASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 CTBP1-AS2-206ENST00000581398 5652 ntBASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 TOMM22P5-201ENST00000416399 439 ntBASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 DUX4L27-201ENST00000554796 1261 ntBASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 AC140878.1-201ENST00000565277 250 ntBASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 AC015911.4-201ENST00000588022 1070 ntBASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 AC100757.3-201ENST00000622361 1406 ntBASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 LINC01230-201ENST00000625222 3017 ntBASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
TRIM56Q9BRZ2 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms